LOCUS       NM_001033999            4813 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RNA polymerase II associated protein 1 (Rpap1),
            mRNA.
ACCESSION   NM_001033999 XM_230480
VERSION     NM_001033999.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4813)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC101894.1,
            CR475672.1 and CB328668.1.
            
            [WARNING] On Aug 9, 2024 this sequence was replaced by
            NM_001033999.3.
            
            On Apr 6, 2007 this sequence version replaced NM_001033999.1.
            
            Sequence Note: The sequence BC101894.1 is from a chimeric clone.
            Only the RNA polymerase II associated protein 1 sequence was
            propagated into this RefSeq record.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4502              BC101894.1         1-4502
            4503-4744           CR475672.1         57-298              c
            4745-4813           CB328668.1         1-69                c
FEATURES             Location/Qualifiers
     source          1..4813
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..4813
                     /gene="Rpap1"
                     /note="RNA polymerase II associated protein 1"
                     /db_xref="GeneID:311338"
                     /db_xref="RGD:1590891"
     exon            1..70
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            71..181
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            182..438
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     CDS             258..4460
                     /gene="Rpap1"
                     /codon_start=1
                     /product="RNA polymerase II-associated protein 1"
                     /protein_id="NP_001029171.1"
                     /db_xref="GeneID:311338"
                     /db_xref="RGD:1590891"
                     /translation="MMLSRPKPGESEVDLLRFQSQFLEAGAAPAVQLVKGSRRRGDAH
                     PDQLPPQDHRDVVMLDSLPDLPPALLPAPSKRARPSPGRPLPHDEDPEERLNRHDEHI
                     TAVLSKIVERDTSSVTVTLPVPSGVAFPPVFHRSQERQVKPAASSKRSIFAQEIAARR
                     VSDNRAPSAEQVVPSPDAPEGAVPCETPSSKDRGSQLPGRSHSFHRPNLITGKGLRSQ
                     AAVQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRAHNHTREQTETKA
                     TKEQNPERPSVPVSKEEPIMSTCTGESGTRDKLEDKLEDKLQPRTPALKLPMTPNKEW
                     LHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLEPDVDLPTHLGLHHHGEE
                     AERAGYSLQELFHLTRSQVSQQRALALHVLSHIVGRAQAGEFGDRLVGSVLRLLLDAG
                     FLFLLRFSLDDRIDSVIAAAVRALRALLVAPGDEELLDSTFSWYHGASVFPMMPSHDD
                     KEDEDEDEELTKEKVNRKTPEEGSRPPPDLARHDVIKGLLATNLLPRFRYVLEVTCPG
                     PSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVREFLPTSWSPIGVGPAPSLYKV
                     PCAAAMKLLRVLASAGRNIAARLLSSFDVRSRLCRFIAEAPRDLALPFEEAEILTTEA
                     FRLWAVAASYGQGGDLYRELYPVLMRALQTLPPELSTHPLQPLSMQRMASLLTLLTQL
                     TLAASTQPEATSGSVESCVVAIPSSITWTHVSGLKPLVEPCLKQTLKFLRRPDVWNAL
                     GPVPSACLLFLGAYYQTWSQQSGLCPEDWLQDMERFLDEFLLPLLSQPPLGRMWDSLR
                     DCSPLCNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLGQI
                     HKGLCRQLAVVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALRHEYHLQYLVLSLAQKA
                     ATSQPEPAASTALHHVMALVLLSRLLPGSEFLAHELLLSCVFRLGFLPENASGGPEAA
                     DFSDGLSLGNSGDPHCRRGALLVQACQDLPSIRSCYLAHCSPARASLLTSQALYRGEL
                     PRVSSLLLPVPKEPLLPTDWPFQPLIHLYHRASDTPSGLPAADTVGITMRVLQWVLVL
                     ESWRPEALWAVPPAARLARLMCVYLVDSELFRETPIQRLVAALLARLCQPQVLPNLKL
                     DCPLPGLTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGV
                     LRALGLPLAQLPVPLECYTEPAEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVN
                     SFVFCQDPKSSDEVKAARRSMLQKVWLLADKDLRQHLLHYKLPNSSLPEGFELYPQLP
                     RLRQQYLQTLPTEVLQNGGFKT"
     exon            439..587
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            588..677
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            678..798
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            799..1020
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1021..1224
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..1340
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1341..1439
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1440..1541
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1542..1709
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1710..1892
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1893..2027
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            2028..2198
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            2199..2356
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            2357..2512
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            2513..2714
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            2715..2824
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            2825..3020
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            3021..3173
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            3174..3316
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            3317..4073
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            4074..4250
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            4251..4310
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
     exon            4311..4796
                     /gene="Rpap1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatggcggcg cccaggccgg tcttgttcga gtaggttgct gtttgcaggg acccgcttca
       61 agttactcag acgctggcga tccaggatgc ttaactagat ccttcggcgc agtctccgga
      121 caggtcgtgt ggccaatagg ctgcggtgta agaggctatt ccaaaatcca gcaaatccaa
      181 tgagtgaatg agaggaattc tcttcaccaa caacgcagta ctggaaggag tcatccacag
      241 ttcacagctc cagggtcatg atgttgtcca gaccgaagcc tggagagtct gaggtggacc
      301 tactgcgctt ccaaagtcag ttcctcgagg ctggtgcagc tccagcggtg cagctggtga
      361 aagggagtag gaggcgtggt gatgcgcatc cagaccagct ccccccacag gaccatcggg
      421 atgtggtgat gctggacagt ctcccagatt tgcccccggc tctgcttcct gctccttcca
      481 agagagctag accaagccct ggccgccccc tgcctcacga tgaagaccct gaggagaggc
      541 tgaacagaca cgatgagcac atcactgctg ttttgtctaa gattgttgaa cgggatacaa
      601 gttcagttac tgtgactctg cctgtgccca gtggtgtggc tttcccccct gtgttccacc
      661 gctctcagga gagacaggtg aaaccagcag catctagtaa aaggagcatc tttgcccaag
      721 agattgcagc aaggagggtg tcagacaaca gggcaccatc agctgagcaa gttgtcccca
      781 gcccagatgc accagagggt gccgtgccct gtgaaacacc ctcctctaag gacagaggca
      841 gccagcttcc tgggaggagc catagcttcc acagaccaaa tctaatcaca ggaaaggggc
      901 tcaggagcca ggcggctgtg caggaggtcc agaccatcca tgaagagaat gtagcaagac
      961 tacaagccat ggatcctgag gagatcctga aggagcagca gcagttactg gctcaacttg
     1021 accccagctt ggttgccttc ttgagagctc ataaccatac ccgggagcaa acagaaacaa
     1081 aagccaccaa ggagcagaac ccagaaaggc cctcagttcc tgtcagtaaa gaagagccca
     1141 tcatgtcaac atgtaccggg gagtctggga ccagggacaa gctggaggac aagttggagg
     1201 acaagctgca gccaagaacc ccagcactga agctccccat gacccccaac aaagaatggc
     1261 tccatatgga caccgtagag ctggagaagc tccactggac ccaggacctg ccaccgctcc
     1321 ggcggcagca gacacaggag agaatgcagg ctcgattcag ccttcaggga gagctcctgg
     1381 agcctgatgt ggatctgccc acacatctgg gcctgcacca ccacggagaa gaggcagaga
     1441 gagcagggta ctctctacag gagctgttcc acctgacccg tagccaggta tcccagcaga
     1501 gagcactggc attgcatgtg ttgtcccaca tcgtcggcag ggcccaggct ggtgagtttg
     1561 gggaccgtct agtgggcagt gtcttgcgcc tcctcttgga tgctggcttc ctcttcctgc
     1621 tgcgcttctc tctggatgac aggatagaca gcgtcattgc agcagctgtc cgagctcttc
     1681 gtgctctgct ggttgctcct ggagatgagg agctccttga cagcaccttc tcttggtatc
     1741 atggagcttc agtgttccct atgatgccca gccacgacga taaagaggat gaagatgagg
     1801 acgaagaact cacaaaagaa aaggtgaatc gaaagacccc tgaggaagga agccgccctc
     1861 cacccgacct ggccagacat gatgtcatca agggtcttct ggctaccaac ctgctgcctc
     1921 ggttccgcta tgtgctggag gtgacctgcc cagggccctc tgtggtcctt gacatcctgg
     1981 ctgtgcttat acgcctggcc cggcattccc tggagtcagc catgagggtc ctggagtgtc
     2041 ctcggctgat ggagaccata gttcgggagt tcttgccgac cagttggtcc cctatagggg
     2101 tggggcctgc tcccagtcta tataaagtgc cttgtgctgc tgccatgaaa ctactcaggg
     2161 tcctggcctc agctgggagg aatatcgctg cccgactgct aagcagcttt gatgtcagga
     2221 gccgactgtg ccgattcata gctgaagcac cacgtgacct ggccttgcca ttcgaagaag
     2281 cagagatcct gacaactgag gccttccgtc tctgggccgt ggctgcctcc tatggccagg
     2341 gtggtgacct ttacagggag ctgtacccag tgctcatgcg ggccctgcag acactgcctc
     2401 cagagctcag cactcatccc ctgcagcccc tgtccatgca gcggatggcc tctctgctca
     2461 ctctgctcac ccagctgacc ctggcagcta gcacacagcc tgaggccacc agtggctctg
     2521 tcgagtcctg tgtggtggcc atcccttcct caatcacctg gacacatgta tctggactca
     2581 agccactggt tgagccatgt ctaaagcaga ccctaaagtt tctgcgcaga cctgatgtgt
     2641 ggaatgccct gggtccggtg cctagtgcct gccttctgtt cttgggtgct tactatcaga
     2701 cctggagcca gcagtcaggc ttgtgcccag aggattggct tcaggacatg gaacgctttt
     2761 tggatgaatt cttgctgcca ctgctgagcc agcctccttt gggcaggatg tgggattcct
     2821 taagggactg ctccccgctc tgcaatccgc tgtcctgtgc ttccacccct gaagctctcc
     2881 ccagcctcgt gtcactaggc tgtgcaggag gctgtccccc tctcagtgtg gctggctcag
     2941 cctcaccctt cccattcctc actgccctcc tctctcttat caacactctg ggccagatcc
     3001 acaaggggct ttgcagacag ctggctgttg tgttgactgc cccaggactc cagaactact
     3061 ttctccagtg tgtggctcct gcacctgcgc cacagctcac acccttctct gcctgggccc
     3121 tgcgccatga gtaccaccta cagtacctgg tgctttccct agcccagaaa gcggcaacat
     3181 cgcagccaga gccagctgcc agcactgccc tccatcatgt tatggccctg gtcctgctga
     3241 gccggctgct gcctggaagt gaattcctcg cccacgagct gctgctgagc tgtgtgttcc
     3301 ggctggggtt cctgccggaa aatgcttcag gtggtccaga ggcagctgac ttctctgatg
     3361 ggctgtcctt agggaacagt ggggaccctc actgtagacg aggggctctc ctagttcaag
     3421 cttgccagga tctccccagc atccgcagct gctacctggc ccattgttca ccagctcgag
     3481 ccagtctgct gacctcccaa gcgttgtacc gtggagagct gccgagagtc tcaagtctgc
     3541 tgctgcctgt acctaaggag ccactgctgc ccactgactg gcccttccag ccgctgatcc
     3601 atctctacca ccgagcttca gatactccct ctgggctgcc tgctgctgac actgtaggca
     3661 tcaccatgcg ggtcctacag tgggtgctag ttctggagag ctggcgccct gaggccctct
     3721 gggctgtgcc ccctgctgcc cgcctggcac gtctcatgtg tgtgtacctg gtggatagcg
     3781 agctttttcg agagactccc atacaacgtc tagtggctgc tcttttagct cggctctgtc
     3841 agccccaagt cttgccaaac ctcaagctgg actgccccct ccctggcctg acctcctttc
     3901 ctgacctcta tgccagcttc ttagaccact ttgaggccgt ctcatttgga gaccacttgt
     3961 ttggggctct ggtcctcctt cctctgcagc gccggttcag tgtcaccttg cgccttgccc
     4021 tctttgggga gcatgtggga gtattgcgag cacttggcct gcctctggct cagctgcctg
     4081 tgcctctgga gtgctacaca gagcctgctg aagacagcct ggctctcctt cagctctact
     4141 tccgggccct ggttactggt gcactccatg cacgttggtg ccccgtcctc tacactgtag
     4201 ctgtggctca tgtcaatagt ttcgtcttct gccaggaccc aaagagctca gatgaggtga
     4261 aggctgcccg aaggagtatg ctgcagaagg tgtggctact ggcagacaag gatctgcggc
     4321 agcatctcct tcactataaa ctccccaact ccagcctccc agaaggcttt gaactgtatc
     4381 cccagttacc tcgcctgagg cagcagtacc ttcagacgct gcccacagag gtgctccaga
     4441 acggaggatt caagacatag ggcacttgcc ccagctaaag atgaactaaa gatgagctaa
     4501 agattcattc tcctgaggct tcccggtgca catcatgaga gaaacacaag cttgccttcc
     4561 ttcctgtgag cacatcgagc ctcttctttt agaacagaag gaactcatat tacattatga
     4621 tactgcagct caggacctgg gagctctgag ggctgtgcta ggagtgactt caatgtttcc
     4681 cctgcggtgg cccaggacag tctgagcaca gctcttctca ccacctccca tctttaccag
     4741 gtcagggtgt gtgattgctg tgctacgccc tgaaataaaa ttcttttcta gtcttaaaaa
     4801 aaaaaaaaaa aaa
//
