LOCUS       NM_001033060            1028 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RPA interacting protein (Rpain), mRNA.
ACCESSION   NM_001033060 XM_006246668 XM_213344
VERSION     NM_001033060.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1028)
  AUTHORS   Park,J., Seo,T., Kim,H. and Choe,J.
  TITLE     Sumoylation of the novel protein hRIP{beta} is involved in
            replication protein A deposition in PML nuclear bodies
  JOURNAL   Mol Cell Biol 25 (18), 8202-8214 (2005)
   PUBMED   16135809
REFERENCE   2  (bases 1 to 1028)
  AUTHORS   Chen,J.Z., Huang,S.D., Ji,C.N., Pang,R.Y., Xie,Y. and Xue,J.L.
  TITLE     Identification, expression pattern, and subcellular location of
            human RIP isoforms
  JOURNAL   DNA Cell Biol 24 (7), 464-469 (2005)
   PUBMED   16008515
REFERENCE   3  (bases 1 to 1028)
  AUTHORS   Farkas,R.H., Qian,J., Goldberg,J.L., Quigley,H.A. and Zack,D.J.
  TITLE     Gene expression profiling of purified rat retinal ganglion cells
  JOURNAL   Invest Ophthalmol Vis Sci 45 (8), 2503-2513 (2004)
   PUBMED   15277470
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Jun 1, 2021 this sequence version replaced
            XM_006246668.4, NM_001033060.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM107857.1, FM138685.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-366               JAXUCZ010000010.1  56191023-56191388
            367-537             JAXUCZ010000010.1  56192481-56192651
            538-598             JAXUCZ010000010.1  56193908-56193968
            599-710             JAXUCZ010000010.1  56194939-56195050
            711-774             JAXUCZ010000010.1  56195204-56195267
            775-915             JAXUCZ010000010.1  56195827-56195967
            916-1028            JAXUCZ010000010.1  56198376-56198488
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1028
                     /gene="Rpain"
                     /gene_synonym="RGD1308492"
                     /note="RPA interacting protein"
                     /db_xref="GeneID:287463"
                     /db_xref="RGD:1308492"
     exon            1..366
                     /gene="Rpain"
                     /gene_synonym="RGD1308492"
                     /inference="alignment:Splign:2.1.0"
     CDS             286..945
                     /gene="Rpain"
                     /gene_synonym="RGD1308492"
                     /note="RAP interaction protein alpha"
                     /codon_start=1
                     /product="RPA-interacting protein"
                     /protein_id="NP_001028232.2"
                     /db_xref="GeneID:287463"
                     /db_xref="RGD:1308492"
                     /translation="MAESSGSPHRLLYKQVGSPPWKETFRQGCLERMRNSRHKLLNRY
                     RQAAGSTLGTASDRLLVQEVMEEEWNSLQSVENCPEALLQLELPLNLAVLQDIEQELW
                     NEEKSIISEYEKGLQFDESCLNSMLAEWEANPLICPVCIKYNLRIMNSVVTCPCGLHI
                     PSHSTDLTEQKLRACLEGNVNEHSAHCPHIPEFSVTGGTEEKPSLLMSCLACDTWAVI
                     L"
     exon            367..537
                     /gene="Rpain"
                     /gene_synonym="RGD1308492"
                     /inference="alignment:Splign:2.1.0"
     exon            538..598
                     /gene="Rpain"
                     /gene_synonym="RGD1308492"
                     /inference="alignment:Splign:2.1.0"
     exon            599..710
                     /gene="Rpain"
                     /gene_synonym="RGD1308492"
                     /inference="alignment:Splign:2.1.0"
     exon            711..774
                     /gene="Rpain"
                     /gene_synonym="RGD1308492"
                     /inference="alignment:Splign:2.1.0"
     exon            775..915
                     /gene="Rpain"
                     /gene_synonym="RGD1308492"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1028
                     /gene="Rpain"
                     /gene_synonym="RGD1308492"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaggctttg gtgctactgc tgggccagtg tgtagtagca ttaagaatga gagaggtata
       61 tctgattgtc tactggacac cttcctctgg gtaaacccag aactttctct caagactctc
      121 accttcctca gcccacttct caactgccac tgcttcaccc atccttggat ttccctaaat
      181 ctgtctctgt gcggagataa gagactaacg cccagaaact ataacttcca gaatcctttg
      241 cgtgcgtaca gggggcgggg atttgggcgt cgcttaaggg atgagatggc cgaatcctcg
      301 gggtctccgc accgcttatt gtacaagcag gtgggctcgc ccccgtggaa agaaactttc
      361 aggcagggat gtcttgagag gatgagaaac agccggcaca agctcctgaa caggtaccgc
      421 caggctgcag gtagcacact ggggacagcc tcagacagac ttcttgtgca agaagtaatg
      481 gaggaagagt ggaattcttt gcagtctgta gagaactgtc cagaggcctt gcttcagttg
      541 gaattgccac tgaacctagc tgtgctgcag gacatcgaac aggagctgtg gaatgaagaa
      601 aagtccatca taagtgagta cgagaagggc ttacagtttg atgaaagttg tctcaacagc
      661 atgttggcgg agtgggaagc aaaccccctc atctgtcctg tgtgtataaa gtacaacctg
      721 agaattatga acagtgtggt cacgtgtccg tgtggcctgc acatcccatc tcactcaaca
      781 gacctgacag agcagaagct tcgggcctgt ttggaaggaa atgtgaacga gcacagtgca
      841 cactgtcccc acatccctga attttcagtc accggtggaa cagaagaaaa gcctagtctt
      901 ctgatgagct gcctggcttg tgacacttgg gctgtgatcc tctagtcctg acctcatggc
      961 tgaaaacaac tcatttccta agagggcctt ttgtatataa ctgattttat attaaaactt
     1021 ttcaaaca
//
