LOCUS       NM_001401177            1106 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RP9, pre-mRNA splicing factor (Rp9), transcript
            variant 1, mRNA.
ACCESSION   NM_001401177 XM_039081714
VERSION     NM_001401177.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Swaminathan,S., Huentelman,M.J., Corneveaux,J.J., Myers,A.J.,
            Faber,K.M., Foroud,T., Mayeux,R., Shen,L., Kim,S., Turk,M.,
            Hardy,J., Reiman,E.M. and Saykin,A.J.
  CONSRTM   Alzheimer's Disease Neuroimaging Initiative  and  NIA-LOAD/NCRAD
            Family Study Group
  TITLE     Analysis of copy number variation in Alzheimer's disease in a
            cohort of clinically characterized and neuropathologically verified
            individuals
  JOURNAL   PLoS One 7 (12), e50640 (2012)
   PUBMED   23227193
REFERENCE   3  (bases 1 to 1106)
  AUTHORS   Maita,H., Kitaura,H., Ariga,H. and Iguchi-Ariga,S.M.
  TITLE     CIR, a corepressor of CBF1, binds to PAP-1 and effects alternative
            splicing
  JOURNAL   Exp Cell Res 303 (2), 375-387 (2005)
   PUBMED   15652350
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Feb 3, 2022 this sequence version replaced XM_039081714.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BE113196.1, SRR26360181.3151581.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMN12840106 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-250               JAXUCZ010000008.1  29280901-29281150   c
            251-281             JAXUCZ010000008.1  29271084-29271114   c
            282-411             JAXUCZ010000008.1  29269726-29269855   c
            412-503             JAXUCZ010000008.1  29266094-29266185   c
            504-565             JAXUCZ010000008.1  29260884-29260945   c
            566-1106            JAXUCZ010000008.1  29259527-29260067   c
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..1106
                     /gene="Rp9"
                     /gene_synonym="RGD1559759; Rp9h"
                     /note="RP9, pre-mRNA splicing factor"
                     /db_xref="GeneID:363032"
                     /db_xref="RGD:1559759"
     exon            1..250
                     /gene="Rp9"
                     /gene_synonym="RGD1559759; Rp9h"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..758
                     /gene="Rp9"
                     /gene_synonym="RGD1559759; Rp9h"
                     /note="isoform 1 is encoded by transcript variant 1;
                     retinitis pigmentosa 9 homolog"
                     /codon_start=1
                     /product="retinitis pigmentosa 9 protein isoform 1"
                     /protein_id="NP_001388106.1"
                     /db_xref="GeneID:363032"
                     /db_xref="RGD:1559759"
                     /translation="MSSGAGSRRPREPPEHELQRRREQKRRRHDAQQLQQLKHLESFY
                     EKPPPGFIKEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGREVKVMQCWRCKR
                     YGHRTGDKECPFFIKGNQKLEQFRVAHEDPMYDIIRENKRHEKDVRIQQLKQLLEDST
                     SDDDGSSSSGDREKHKKRKKKEKHKKRKKEKKKKKKRKHKASKSHESSDSK"
     exon            251..281
                     /gene="Rp9"
                     /gene_synonym="RGD1559759; Rp9h"
                     /inference="alignment:Splign:2.1.0"
     exon            282..411
                     /gene="Rp9"
                     /gene_synonym="RGD1559759; Rp9h"
                     /inference="alignment:Splign:2.1.0"
     exon            412..503
                     /gene="Rp9"
                     /gene_synonym="RGD1559759; Rp9h"
                     /inference="alignment:Splign:2.1.0"
     exon            504..565
                     /gene="Rp9"
                     /gene_synonym="RGD1559759; Rp9h"
                     /inference="alignment:Splign:2.1.0"
     exon            566..1106
                     /gene="Rp9"
                     /gene_synonym="RGD1559759; Rp9h"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggggcctg gctacgcgtt ccccgctgga gctttccggc acgggcccgt gggacgttgg
       61 cggggttgcg ctgaggggcg taagaggtgt ctgtccacct cctaagcccg cctcgggtcg
      121 cgatgtcgtc cggggctggg tctcggcggc cgcgggagcc gccggagcac gagctgcagc
      181 ggcggcggga gcagaaacgg cggcggcacg acgcgcagca gctgcagcag ctcaagcacc
      241 tggagtcctt ttacgagaaa cctccccccg ggtttattaa ggaggatgag acgaagccag
      301 aagactgtat accagacgtg cccggcaatg agcacgccag ggagtttctg gctcatgctc
      361 cgactaaagg actttggatg ccgctgggga gagaggtcaa agttatgcag tgttggcgtt
      421 gcaaacggta tggccatcga acaggcgaca aagaatgccc tttctttatc aaaggcaacc
      481 agaagttaga gcagttccgt gttgcacatg aagatcccat gtatgacatc attcgagaga
      541 ataaaagaca tgaaaaggat gtaaggatcc agcagttgaa gcagttgctg gaggactcca
      601 cctcagacga cgatggcagc agctcctcgg gagacagaga gaagcacaag aaacggaaga
      661 agaaagagaa gcacaagaaa cggaagaagg agaagaaaaa gaagaagaaa cgcaagcaca
      721 aggcttccaa gtctcatgag agctcagact caaagtgaca gctgatggtg gcatcctcag
      781 caccatccac agaccaaagg acagagccac cgaaagcgag ggacgggcac ctcactgcct
      841 cctggtgctg agggaccacc gcagagcagg tgggctcccc ggtgcagctg cccacatggc
      901 gccaggtcct ctcccctgat ggtcacttgt gtctgtgggt gccttcctag ccgcctgcag
      961 tgggaggtga tgaaagactc agaagaagca ctctggggca ctgccacggc gtttgccctc
     1021 catggtgtgg taactcattc tccatgagca taaggcttca cccttctctg tgctttggga
     1081 taataaaatt tgttttattt tttaaa
//
