LOCUS       XM_006232926            2956 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RAR-related orphan receptor C (Rorc),
            transcript variant X1, mRNA.
ACCESSION   XM_006232926
VERSION     XM_006232926.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001427272.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006232926.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2956
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2956
                     /gene="Rorc"
                     /note="RAR-related orphan receptor C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     ESTs, 18 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 119
                     samples with support for all annotated introns"
                     /db_xref="GeneID:368158"
                     /db_xref="RGD:1595785"
     CDS             126..1652
                     /gene="Rorc"
                     /codon_start=1
                     /product="nuclear receptor ROR-gamma isoform X1"
                     /protein_id="XP_006232988.2"
                     /db_xref="GeneID:368158"
                     /db_xref="RGD:1595785"
                     /translation="MDRAPQRHHRTSRELLAAKKTHTSQIEVIPCKICGDKSSGIHYG
                     VITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVK
                     FGRMSKKQRDSLHAEVQKQLQQQQQREQVAKTPPAGSHGADTLTYTLGVPDGQLPLGA
                     SPDLPEASACPPGLLRASGSGPPYSNTLAKTEVQGASCHLEYSPERGKAEGRDSIYST
                     DGQLTLGRRGLQLGEPEQGSDSHCSPSFCSAPEAPYASLTDIEYLVQNVCKSYRETCQ
                     LRLEDLLRQRTNLFSREEVTSYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMEL
                     CQNDQIILLKAGAMEVVLVRMCRAYNANNHTVFFEGKYGGVELFRALGCSELISSIFD
                     FSHFLSALCFSEDEIALYTALVLINANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQ
                     GLLAKLPPKGKLRSLCSQHVEKLQDFQHLHPIVVQAAFPPLYKELFSTDIESSEGLSK
                     "
ORIGIN      
        1 ctcctttccc ctgcctgctg acgggccagg tgctccctcc ctcttccctc ctccctcccc
       61 tgggccctgc tccctgccct cctgggcagc cagggcagca aggacggcac caagggagct
      121 accccatgga cagggcccca cagagacacc accgaacatc tcgggagttg ctggctgcaa
      181 agaagaccca cacctcacaa atcgaagtga tcccttgcaa gatctgtggg gacaagtcat
      241 ctggcatcca ctacggggtt atcacctgtg aggggtgcaa gggcttcttc cgccgcagcc
      301 agcagtgcaa tgtggcctac tcctgcaccc gtcagcagaa ctgccccatt gaccgaacca
      361 gccgcaaccg atgccagcac tgccgcctgc agaagtgcct ggctctgggc atgtccagag
      421 atgctgtcaa gttcggccga atgtccaaga agcagaggga cagtctgcat gcagaggtgc
      481 agaaacaact gcaacagcag cagcaacggg aacaagtagc caagactcct ccagctggga
      541 gccatggagc agacacactc acatacactt taggggtccc agatgggcag ctaccactgg
      601 gcgcctcacc tgacctgccc gaggcctctg cttgtccccc tggcctcctg agagcctcag
      661 gctctggccc accatattcc aataccttgg ccaaaacaga ggtccaaggg gcctcctgcc
      721 accttgagta tagcccagag cgaggcaaag ctgaaggcag agacagcatc tatagcactg
      781 acggccagct tactcttgga agacgtggac ttcagcttgg ggaaccagaa cagggctcag
      841 acagccactg cagtcccagt ttctgcagtg ccccagaggc accatatgcc tctctgacag
      901 acatagagta cctggtacag aatgtctgca agtcctaccg agagacgtgc cagctacgcc
      961 tggaggacct tctacggcag cgcaccaacc tcttctcacg ggaggaggtg accagctacc
     1021 agaggaagtc aatgtgggag atgtgggagc gctgtgccca ccacctcact gaggccattc
     1081 agtacgtggt ggagttcgcc aagcggctct caggcttcat ggagctgtgc cagaatgatc
     1141 agatcatact actgaaagca ggagcaatgg aagtcgtcct cgtcagaatg tgccgggcct
     1201 acaatgccaa caaccacaca gtcttttttg aaggcaaata cggtggtgtg gagctgttcc
     1261 gagccttggg ctgcagcgag ctcatcagct ccatattcga cttttcccac ttcctcagcg
     1321 ccctgtgttt ttctgaggat gagattgccc tctacacggc cttggttctc atcaatgcca
     1381 accgtcctgg gctccaagaa aagaggagag tggagcatct gcaatacaat ttggagctgg
     1441 cctttcatca tcatctctgc aagactcatc gacaaggcct cctagccaag ctgccaccca
     1501 aggggaagct ccggagcctg tgcagccaac atgtggaaaa gctacaggac ttccagcacc
     1561 tccaccccat cgtggtccaa gccgccttcc ctccactcta taaggaactc ttcagcactg
     1621 acattgagtc ctctgagggg ctgtcaaagt gacccggagg aaggacaact ttctacttcc
     1681 ttcagccctc tgaccgtctc cctggactcc actcaccagc ctttccctct ctgcactctg
     1741 tgaagggtga tctccctagg agtcaaatac taagactggt ttctgcccct aggcttgccc
     1801 ggtagtgcca cagcagcaag cgatggagaa aaggcttgtc atgtttgatt tcccataagt
     1861 tccaccctgg ctctggaagc tgtgggatag atgggatata ggatgaccga gtcaaacaaa
     1921 caaaaagcca gaaagacaaa catcggggat aaatccaagt acctgggatg agagaactca
     1981 aacctaggct cagaagctaa taacagacct ttcaatacct cactgtattt ctccacaggc
     2041 tcctcctggg ggagatggat ctagctcaga gactggtggc aagcacccag aaggacctgt
     2101 atataacaag aatatggatt cttgagattt tctgccttcc ttcttcctag ttgagaaatg
     2161 ttgttgaccc cacccccccc ccaccccccc acacacacac ccgttttctg ggacctaaaa
     2221 tgcctggata cacaatgaat gagagtgggg tggagataag ggcccaggat aactgtttta
     2281 tgggagttgg gtatggagaa ggacatcact ggcaaaatta gaatgtaaac cccttgtgta
     2341 tgctctaaaa gtcaaatttg ttaccacagt ctaatcagag acacccatcc acacaggtgg
     2401 agcacacagt ggctctgcct ctggtgacac agttctacag acaggtttct tctgacacaa
     2461 tctcttcctt gaggtcacag ctctgagaag ccatagggtc ttaagggaaa gttccaatcc
     2521 atacaggaca ctagaacaca acatcgcagc cccagctgtc ttctgtccca agaacgatcc
     2581 gtaaaagaag cagaggactt gatgctgact gccagaatcc agggaccagc acttgggagg
     2641 atgcccttga cttcagtcta cactgcctct ccatggggaa ggagggcacc cccccacccc
     2701 acccccgctc tgtacctgtg tgctgctgac cccagtatga aggagtgact agggacagga
     2761 cagggacctg tttctcctcc ataatcttgc tcagaatttc tctcagtttg taagctgcag
     2821 actctcccag gaggtgtaag cagcagatga gagggaggga ggggtttttt tttcccctct
     2881 caacagaagg gtttagctag gtgaacataa accccaactt gtgccattgt ttataaaacg
     2941 attttaaagg ctggaa
//
