LOCUS       NM_001191086             769 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus rhophilin associated tail protein 1-like
            (Ropn1l), mRNA.
ACCESSION   NM_001191086 XM_001064653
VERSION     NM_001191086.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Jeanson,L., Thomas,L., Copin,B., Coste,A., Sermet-Gaudelus,I.,
            Dastot-Le Moal,F., Duquesnoy,P., Montantin,G., Collot,N.,
            Tissier,S., Papon,J.F., Clement,A., Louis,B., Escudier,E.,
            Amselem,S. and Legendre,M.
  TITLE     Mutations in GAS8, a Gene Encoding a Nexin-Dynein Regulatory
            Complex Subunit, Cause Primary Ciliary Dyskinesia with Axonemal
            Disorganization
  JOURNAL   Hum Mutat 37 (8), 776-785 (2016)
   PUBMED   27120127
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Fiedler,S.E., Dudiki,T., Vijayaraghavan,S. and Carr,D.W.
  TITLE     Loss of R2D2 proteins ROPN1 and ROPN1L causes defects in murine
            sperm motility, phosphorylation, and fibrous sheath integrity
  JOURNAL   Biol Reprod 88 (2), 41 (2013)
   PUBMED   23303679
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 769)
  AUTHORS   Fiedler,S.E., Sisson,J.H., Wyatt,T.A., Pavlik,J.A., Gambling,T.M.,
            Carson,J.L. and Carr,D.W.
  TITLE     Loss of ASP but not ROPN1 reduces mammalian ciliary motility
  JOURNAL   Cytoskeleton (Hoboken) 69 (1), 22-32 (2012)
   PUBMED   22021175
REFERENCE   4  (bases 1 to 769)
  AUTHORS   Newell,A.E., Fiedler,S.E., Ruan,J.M., Pan,J., Wang,P.J.,
            Deininger,J., Corless,C.L. and Carr,D.W.
  TITLE     Protein kinase A RII-like (R2D2) proteins exhibit differential
            localization and AKAP interaction
  JOURNAL   Cell Motil Cytoskeleton 65 (7), 539-552 (2008)
   PUBMED   18421703
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jul 17, 2010 this sequence version replaced XM_001064653.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1147014.1,
                                           SRR26360172.1184639.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-131               JAXUCZ010000002.1  84164086-84164216   c
            132-255             JAXUCZ010000002.1  84161485-84161608   c
            256-417             JAXUCZ010000002.1  84159250-84159411   c
            418-593             JAXUCZ010000002.1  84155980-84156155   c
            594-769             JAXUCZ010000002.1  84153529-84153704   c
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q23"
     gene            1..769
                     /gene="Ropn1l"
                     /note="rhophilin associated tail protein 1-like"
                     /db_xref="GeneID:685646"
                     /db_xref="RGD:1591367"
     CDS             1..657
                     /gene="Ropn1l"
                     /note="ropporin 1-like"
                     /codon_start=1
                     /product="ropporin-1-like protein"
                     /protein_id="NP_001178015.1"
                     /db_xref="GeneID:685646"
                     /db_xref="RGD:1591367"
                     /translation="MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLQWSAG
                     YFSALSRGDPLPVKDRIEMPVATQKTDTGLTQGLLKVLHKQCSHKQYVELADLEKKWK
                     NLCLPVEKFRAIVDLDPSEDKMEWIKFLALGCSSLGGTLNTAMKNVCEILTSDPEGGP
                     ARIPFETFAYIYQYLSALDPEFSAVETETYLANLRDTSESRKNGMIGLSDFVIGKKPV
                     "
     exon            1..131
                     /gene="Ropn1l"
                     /inference="alignment:Splign:2.1.0"
     exon            132..255
                     /gene="Ropn1l"
                     /inference="alignment:Splign:2.1.0"
     exon            256..417
                     /gene="Ropn1l"
                     /inference="alignment:Splign:2.1.0"
     exon            418..593
                     /gene="Ropn1l"
                     /inference="alignment:Splign:2.1.0"
     exon            594..769
                     /gene="Ropn1l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgccgctgc ccgacaccat gttctgcgcg cagcagatcc acatcccccc ggagctgccg
       61 gacatcctca agcagttcac caaggctgcc atccgtacgc agccggcgga cgtgctgcag
      121 tggtcggcag ggtatttttc agccctgtcc cgaggagacc cacttcccgt aaaggacaga
      181 attgaaatgc ctgtggctac acagaagact gacacaggcc tgacccaggg actcctgaaa
      241 gtcctgcaca agcagtgtag ccacaaacaa tatgtggaat tagcagatct tgagaagaag
      301 tggaaaaatt tgtgccttcc agtagaaaag ttcagagcaa tcgtggatct ggatccgagt
      361 gaagacaaaa tggaatggat caaattttta gcacttggat gtagctcact gggtgggacc
      421 ctgaacacgg ccatgaagaa cgtgtgtgag atcctcacct ctgacccaga gggtggcccc
      481 gctcgcattc cctttgagac gtttgcctac atttaccagt acttgtctgc attggatcca
      541 gaattctcgg ccgtggagac cgagacctat cttgccaatt taagagacac gtcagaatct
      601 agaaagaatg gcatgatagg actttcggac ttcgtcattg gaaaaaagcc agtataggaa
      661 gccttgaaga gaaagctctg aagagtagag ccttaatgca gagaggaaca cgtttaatgt
      721 tgaagctttt gcgaaacctt ggcgccaaat acagcttgtc attaccttg
//
