LOCUS       NM_001025628             954 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Rattus norvegicus rhophilin associated tail protein 1 (Ropn1),
            mRNA.
ACCESSION   NM_001025628 XM_221390
VERSION     NM_001025628.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Yachie,N., Petsalaki,E., Mellor,J.C., Weile,J., Jacob,Y., Verby,M.,
            Ozturk,S.B., Li,S., Cote,A.G., Mosca,R., Knapp,J.J., Ko,M., Yu,A.,
            Gebbia,M., Sahni,N., Yi,S., Tyagi,T., Sheykhkarimli,D., Roth,J.F.,
            Wong,C., Musa,L., Snider,J., Liu,Y.C., Yu,H., Braun,P.,
            Stagljar,I., Hao,T., Calderwood,M.A., Pelletier,L., Aloy,P.,
            Hill,D.E., Vidal,M. and Roth,F.P.
  TITLE     Pooled-matrix protein interaction screens using Barcode Fusion
            Genetics
  JOURNAL   Mol Syst Biol 12 (4), 863 (2016)
   PUBMED   27107012
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 954)
  AUTHORS   Fiedler,S.E., Dudiki,T., Vijayaraghavan,S. and Carr,D.W.
  TITLE     Loss of R2D2 proteins ROPN1 and ROPN1L causes defects in murine
            sperm motility, phosphorylation, and fibrous sheath integrity
  JOURNAL   Biol Reprod 88 (2), 41 (2013)
   PUBMED   23303679
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 954)
  AUTHORS   Fiedler,S.E., Sisson,J.H., Wyatt,T.A., Pavlik,J.A., Gambling,T.M.,
            Carson,J.L. and Carr,D.W.
  TITLE     Loss of ASP but not ROPN1 reduces mammalian ciliary motility
  JOURNAL   Cytoskeleton (Hoboken) 69 (1), 22-32 (2012)
   PUBMED   22021175
REFERENCE   4  (bases 1 to 954)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   5  (bases 1 to 954)
  AUTHORS   Newell,A.E., Fiedler,S.E., Ruan,J.M., Pan,J., Wang,P.J.,
            Deininger,J., Corless,C.L. and Carr,D.W.
  TITLE     Protein kinase A RII-like (R2D2) proteins exhibit differential
            localization and AKAP interaction
  JOURNAL   Cell Motil Cytoskeleton 65 (7), 539-552 (2008)
   PUBMED   18421703
REFERENCE   6  (bases 1 to 954)
  AUTHORS   Carr,D.W., Fujita,A., Stentz,C.L., Liberty,G.A., Olson,G.E. and
            Narumiya,S.
  TITLE     Identification of sperm-specific proteins that interact with
            A-kinase anchoring proteins in a manner similar to the type II
            regulatory subunit of PKA
  JOURNAL   J Biol Chem 276 (20), 17332-17338 (2001)
   PUBMED   11278869
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099132.1.
            
            On Jul 22, 2005 this sequence version replaced XM_221390.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099132.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q22"
     gene            1..954
                     /gene="Ropn1"
                     /note="rhophilin associated tail protein 1"
                     /db_xref="GeneID:288053"
                     /db_xref="RGD:1310675"
     exon            1..151
                     /gene="Ropn1"
                     /inference="alignment:Splign:2.1.0"
     exon            152..279
                     /gene="Ropn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             164..802
                     /gene="Ropn1"
                     /note="rhophilin-associated protein 1; ropporin, rhophilin
                     associated protein 1"
                     /codon_start=1
                     /product="ropporin-1"
                     /protein_id="NP_001020799.1"
                     /db_xref="GeneID:288053"
                     /db_xref="RGD:1310675"
                     /translation="MPQTDKQVCIPPELPELLKQFTKAAIRTQPPDLIQWAAEYFGAM
                     SRGEIPPVRERSEQVPLSNWAELTPELLKVLHSRVGGRLIIHADELAQMWKVLNLPTD
                     LFNSVMNVGRFTEEIEWLKFLALACSSLGVTIAKTLKIVCEVLSCDHDGGPPRIPFST
                     FQFLYTYIAEVDGEISSSHVTRMLNYIEQEVIGPDGLIKVNDFTQNPRVRLE"
     exon            280..397
                     /gene="Ropn1"
                     /inference="alignment:Splign:2.1.0"
     exon            398..559
                     /gene="Ropn1"
                     /inference="alignment:Splign:2.1.0"
     exon            560..735
                     /gene="Ropn1"
                     /inference="alignment:Splign:2.1.0"
     exon            736..931
                     /gene="Ropn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttgctgct gttttggtcc cacccaaaaa ggtcctcccg ctctcccccc accaagggtc
       61 caggcgctgg agctctcact acacctcccg cctgatacca ggcgagagga gtcgcctgaa
      121 accagacacc ccctttggag gccaaactga ggtcaagcga tcaatgcctc agacagacaa
      181 acaagtatgc atcccaccgg agctgccgga gctgctgaag cagtttacca aagctgccat
      241 tcgaacccag cctcccgatc tcattcagtg ggcggccgag tatttcgggg ccatgtcccg
      301 tggagagatc cctccagtga gagagagatc tgagcaagtc cctctgtcca actgggctga
      361 actgacacct gagctgttga aggtcctgca ctcccgggtt ggtggcagac tgatcatcca
      421 cgcagatgag ctggcccaga tgtggaaggt gttgaatctg cccacagacc tgtttaacag
      481 tgtgatgaac gtgggtcgct tcacagagga gatcgagtgg ctgaagtttt tagcccttgc
      541 ttgtagctct cttggagtta ccattgccaa aactctcaag atagtgtgtg aagttttatc
      601 ctgtgaccat gatggaggac caccccggat ccctttcagc accttccagt ttctgtacac
      661 gtatatcgct gaagtggatg gggaaatctc ttcatcccac gttaccagga tgttaaacta
      721 cattgaacag gaagtaattg gtcctgatgg cttaatcaag gtgaatgact ttactcaaaa
      781 tccaagggtt cggctggaat aaaagcacaa ttttggcagt tttaaaggaa gatacagagg
      841 tggctgtact tcagaatagc tgaacttcat gcaccatcta aagtcaattt tcttttatga
      901 ctggtacaac taataaacaa ttagccagga aaaaaaaaaa aaaaaaaaaa aaaa
//
