LOCUS       NM_001009690            1570 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Rattus norvegicus retinal outer segment membrane protein 1 (Rom1),
            mRNA.
ACCESSION   NM_001009690 XM_219564
VERSION     NM_001009690.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Otake,H., Yamamoto,T., Deguchi,S., Taga,A. and Nagai,N.
  TITLE     Retinal proteomic evaluation of rats following
            streptozotocin-injection using shotgun proteomics
  JOURNAL   Mol Med Rep 21 (1), 379-386 (2020)
   PUBMED   31746385
  REMARK    GeneRIF: Retinal proteomic evaluation of rats following
            streptozotocininjection using shotgun proteomics.
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Hagstrom,S.A., Watson,R.F., Pauer,G.J. and Grossman,G.H.
  TITLE     Tulp1 is involved in specific photoreceptor protein transport
            pathways
  JOURNAL   Adv Exp Med Biol 723, 783-789 (2012)
   PUBMED   22183407
REFERENCE   3  (bases 1 to 1570)
  AUTHORS   Westfall,J.E., Hoyt,C., Liu,Q., Hsiao,Y.C., Pierce,E.A.,
            Page-McCaw,P.S. and Ferland,R.J.
  TITLE     Retinal degeneration and failure of photoreceptor outer segment
            formation in mice with targeted deletion of the Joubert syndrome
            gene, Ahi1
  JOURNAL   J Neurosci 30 (26), 8759-8768 (2010)
   PUBMED   20592197
REFERENCE   4  (bases 1 to 1570)
  AUTHORS   Sato,H., Suzuki,T., Ikeda,K., Masuya,H., Sezutsu,H., Kaneda,H.,
            Kobayashi,K., Miura,I., Kurihara,Y., Yokokura,S., Nishida,K.,
            Tamai,M., Gondo,Y., Noda,T. and Wakana,S.
  TITLE     A monogenic dominant mutation in Rom1 generated by
            N-ethyl-N-nitrosourea mutagenesis causes retinal degeneration in
            mice
  JOURNAL   Mol Vis 16, 378-391 (2010)
   PUBMED   20300562
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1570)
  AUTHORS   Yang,Z., Chen,Y., Lillo,C., Chien,J., Yu,Z., Michaelides,M.,
            Klein,M., Howes,K.A., Li,Y., Kaminoh,Y., Chen,H., Zhao,C., Chen,Y.,
            Al-Sheikh,Y.T., Karan,G., Corbeil,D., Escher,P., Kamaya,S., Li,C.,
            Johnson,S., Frederick,J.M., Zhao,Y., Wang,C., Cameron,D.J.,
            Huttner,W.B., Schorderet,D.F., Munier,F.L., Moore,A.T., Birch,D.G.,
            Baehr,W., Hunt,D.M., Williams,D.S. and Zhang,K.
  TITLE     Mutant prominin 1 found in patients with macular degeneration
            disrupts photoreceptor disk morphogenesis in mice
  JOURNAL   J Clin Invest 118 (8), 2908-2916 (2008)
   PUBMED   18654668
REFERENCE   6  (bases 1 to 1570)
  AUTHORS   Clarke,G., Goldberg,A.F., Vidgen,D., Collins,L., Ploder,L.,
            Schwarz,L., Molday,L.L., Rossant,J., Szel,A., Molday,R.S.,
            Birch,D.G. and McInnes,R.R.
  TITLE     Rom-1 is required for rod photoreceptor viability and the
            regulation of disk morphogenesis
  JOURNAL   Nat Genet 25 (1), 67-73 (2000)
   PUBMED   10802659
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087605.1.
            
            On Jan 13, 2005 this sequence version replaced XM_219564.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087605.1, CA997766.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00155315, SAMN12840130
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1570
                     /gene="Rom1"
                     /note="retinal outer segment membrane protein 1"
                     /db_xref="GeneID:309201"
                     /db_xref="RGD:1306070"
     exon            1..806
                     /gene="Rom1"
                     /inference="alignment:Splign:2.1.0"
     CDS             217..1272
                     /gene="Rom1"
                     /note="ROSP1"
                     /codon_start=1
                     /product="rod outer segment membrane protein 1"
                     /protein_id="NP_001009690.1"
                     /db_xref="GeneID:309201"
                     /db_xref="RGD:1306070"
                     /translation="MAPVLPVVLPLQPRIRLAQGTWLLSWLLALAGGLTLLCSGHLLV
                     QLWHLGTFLAPSCSFPALPQTALAAGAVALGTGLGGAGASRASLDAAQYPPWRGVLTP
                     LLVVGTAAGGGLLTLGLGLALALPVSLHQGLEEGLQAALAHYKDTEVPGHCQAKRLMD
                     ELQLRYHCCGRHGYKDWFGVQWVSSRYLDPNDQDVVDRIQSNVEGLYLIDGVPFSCCN
                     PHSPRPCLQSQLSDPYAHPLFDPRQPNLNLWAQGCHEVLVGHLQGLSGTLGSILAVTL
                     LLQVLVLLGLRYLQTALEGLGGVIDGEGETQGYLLPGGLKDILQTAWLQGGLAHKPAP
                     EEAPPDEEPPKEVLAEA"
     exon            807..1053
                     /gene="Rom1"
                     /inference="alignment:Splign:2.1.0"
     exon            1054..1548
                     /gene="Rom1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgggggcgg ggcctttcct aaagggcaag gctaagaagc atcctgaatc ggggctggca
       61 gagggttatt aaggctggag tggaaggatg tccagggtat tggggtcagg ttggcattag
      121 ccctgttgaa gccaggctgg gctgactcag catcctgcct gctctagcca accccaagcc
      181 ccgacggctc ctcactccct tgggcagaga tgggagatgg cgccggtgct gcccgtggtg
      241 ctgcccctcc aaccccgtat ccgtttggca caggggacct ggctcctctc ctggctactg
      301 gcactagccg gtggcctcac cctcctctgt agtgggcacc tcctggtaca gctgtggcac
      361 cttggcacct tcctggctcc ctcttgttca ttccctgccc tgccccagac tgccctggcg
      421 gcaggagcag tggcattagg cacagggcta ggaggtgcag gagccagccg ggcgagcctg
      481 gatgcagctc aataccctcc ctggcgaggg gtcctgactc cactgctagt ggttggcact
      541 gctgcaggtg gggggctgct gacccttggt ctggggctag ccctggcctt gcctgtaagt
      601 ctccaccagg gactggaaga gggcctgcag gctgccttgg ctcactacaa ggatacagag
      661 gtgcctggac actgtcaggc caaacgactg atggatgaat tgcagctgag gtaccattgc
      721 tgtgggcgcc atggctacaa ggattggttt ggtgttcagt gggtcagcag ccgttacctg
      781 gaccccaatg accaagatgt ggttgaccgg atccagagca acgtggaagg tttatatctg
      841 attgatggag tgcccttctc ctgttgtaac ccccactcac cccggccctg cctgcaaagc
      901 cagctctcag acccctatgc ccatccactc ttcgatcctc ggcagcccaa cctaaacctg
      961 tgggcccaag ggtgccacga agtgctcgtg gggcacctgc agggtttgtc cggcacactg
     1021 ggaagtattc tggctgtcac cttattgctg caggttcttg tgctccttgg tttgcggtat
     1081 ttgcagacag cgctggaagg ccttggagga gtcattgatg gggaaggaga gacccagggc
     1141 tatcttttgc ctggtgggct gaaagacata ctgcaaactg catggctaca gggagggctt
     1201 gcccacaagc cagcacctga ggaggcccca ccagatgagg aacctcccaa ggaagttcta
     1261 gctgaggcct agaaacctga aggggtcgtc ggggtgggaa ggggaaagat ggacaaatat
     1321 ggagaactca gaatccttta ctcaggctca gggaaagagt ggttcctggg attacaggag
     1381 ttagagcaat cagagctgga ctgtgacaag gtccagtgtc ctgaagccca gccattgcgg
     1441 tcaaaaccac caaggctgag aagagatgag ggtgagaggg aagtgacagc caacggactg
     1501 aagactcttt ctagtattca gactctacaa taaagtttgt ggacagaaaa aaaaaaaaaa
     1561 aaaaaaaaaa
//
