LOCUS       NM_001024864            1553 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus rogdi atypical leucine zipper (Rogdi), mRNA.
ACCESSION   NM_001024864 XM_213213
VERSION     NM_001024864.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Riemann,D., Wallrafen,R. and Dresbach,T.
  TITLE     The Kohlschutter-Tonz syndrome associated gene Rogdi encodes a
            novel presynaptic protein
  JOURNAL   Sci Rep 7 (1), 15791 (2017)
   PUBMED   29150638
  REMARK    GeneRIF: Green fluorescent protein-Rogdi harbours efficient signals
            for presynaptic targeting, and that Rogdi is a presynaptic protein.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Huckert,M., Mecili,H., Laugel-Haushalter,V., Stoetzel,C.,
            Muller,J., Flori,E., Laugel,V., Maniere,M.C., Dollfus,H. and
            Bloch-Zupan,A.
  TITLE     A Novel Mutation in the ROGDI Gene in a Patient with
            Kohlschutter-Tonz Syndrome
  JOURNAL   Mol Syndromol 5 (6), 293-298 (2014)
   PUBMED   25565929
REFERENCE   3  (bases 1 to 1553)
  AUTHORS   Boyken,J., Gronborg,M., Riedel,D., Urlaub,H., Jahn,R. and Chua,J.J.
  TITLE     Molecular profiling of synaptic vesicle docking sites reveals novel
            proteins but few differences between glutamatergic and GABAergic
            synapses
  JOURNAL   Neuron 78 (2), 285-297 (2013)
   PUBMED   23622064
REFERENCE   4  (bases 1 to 1553)
  AUTHORS   Mory,A., Dagan,E., Illi,B., Duquesnoy,P., Mordechai,S., Shahor,I.,
            Romani,S., Hawash-Moustafa,N., Mandel,H., Valente,E.M., Amselem,S.
            and Gershoni-Baruch,R.
  TITLE     A nonsense mutation in the human homolog of Drosophila rogdi causes
            Kohlschutter-Tonz syndrome
  JOURNAL   Am J Hum Genet 90 (4), 708-714 (2012)
   PUBMED   22482807
REFERENCE   5  (bases 1 to 1553)
  AUTHORS   Tulin,E.E., Onoda,N., Hasegawa,M., Nosaka,T., Nomura,H. and
            Kitamura,T.
  TITLE     Genetic approach and phenotype-based complementation screening for
            identification of stroma cell-derived proteins involved in cell
            proliferation
  JOURNAL   Exp Cell Res 272 (1), 23-31 (2002)
   PUBMED   11740862
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098001.1.
            
            On Jun 17, 2005 this sequence version replaced XM_213213.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098001.1, FQ213298.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1553
                     /gene="Rogdi"
                     /note="rogdi atypical leucine zipper"
                     /db_xref="GeneID:287061"
                     /db_xref="RGD:1560021"
     exon            1..235
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     CDS             191..1054
                     /gene="Rogdi"
                     /note="leucine zipper domain protein; rogdi homolog;
                     rogdi-like protein"
                     /codon_start=1
                     /product="protein rogdi homolog"
                     /protein_id="NP_001020035.1"
                     /db_xref="GeneID:287061"
                     /db_xref="RGD:1560021"
                     /translation="MATAMAASAAERAVLEEEFRWLLHAEVHAVLRQLQDILKEASLR
                     FTLPGPSTEGPAKQENFILGSCGTDQVKGVLTLQGDALSQADVNLKMPRNNQLLHFAF
                     REDKQWKLQQIQDARNHVSQAIYLLANRDESYQFKTGAEVLKLMDAVMLQLTRARNRL
                     TTPATLTLPEIAASGLTRMFAPTLPSDLLVNVYINLNKLCLTVYQLHTLQPTSTKNFR
                     PAGGAVLHSPGAMFEWGSQRLEVSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKIS
                     VFSSYWSSRPF"
     exon            236..307
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     exon            308..390
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     exon            391..445
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     exon            446..526
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     exon            527..622
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     exon            623..721
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     exon            722..835
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     exon            836..885
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     exon            886..1012
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1530
                     /gene="Rogdi"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaggcgaag cgtggcctgt cggcccagcc acccaccagc caggactgga agctgcagcc
       61 cttggtttga ggcgtggccg gcttggaggc ggagtttgtg ccggtttgga atcggtcaca
      121 ggaggaggag ggaagggggc gggcgctgcg cgctgagctc ctgactcaga gacagcgctc
      181 ggcccggacg atggcgaccg cgatggctgc gagcgccgcg gagcgggcag tactggagga
      241 ggagtttcgc tggttgctgc acgctgaggt gcacgccgtg ctgagacagc tacaggacat
      301 ccttaaggag gcctctcttc gcttcactct ccccggcccc agcaccgagg gtcctgccaa
      361 gcaggagaac ttcatcctgg gcagctgtgg cacagaccag gtgaaagggg tgctgactct
      421 gcaaggggat gccctcagcc aagcggatgt gaacttgaag atgcctcgga acaaccagtt
      481 gttgcacttc gccttccggg aggacaagca gtggaagcta cagcagattc aggatgccag
      541 gaaccacgtg agccaagcta tttatctcct ggcaaaccgg gatgagagct accagttcaa
      601 gacaggagcg gaagtcctca agctcatgga tgccgttatg ctgcaactga cgagagccag
      661 aaaccggctc actaccccag ccaccctcac cctgccagag attgccgcca gcggcctcac
      721 gcggatgttt gcccccaccc taccctctga cctgctggtc aatgtctaca tcaacctcaa
      781 caagctgtgc ctcactgtgt accagctgca cactctgcag cccacctcca ccaagaactt
      841 ccgccccgcc ggaggtgcag tgctccacag cccaggggca atgtttgaat ggggctccca
      901 gcgcctcgaa gtgagccacg tacacaaggt agaatgtgtg atcccctggc tcaacgatgc
      961 cctagtgtac ttcaccgtct cactgcagct ctgccagcag ctcaaggata agatctctgt
     1021 gttttccagc tactggagct ccaggccctt ctgagcaagc ccctgcctga atcctcgtcc
     1081 caggggggta gccctgactt gtagtccctc cccccaacac atacccctaa ggtacctgtc
     1141 actgtcagac accccccagt ctcctcgcta ccctgtgaag ctgatggaag tgaatgtgag
     1201 ctacacctgg agaaagggga gctggcttgg ttttttggtt gagggggcag tcaagaaggt
     1261 gagctgaggt gtggccatgc tcctaaacct gccttcctga atactctggg aacctttgca
     1321 ctaagggtgg gaccaagccc aggcctctcc tctctcccac ccattggaga gggagagatg
     1381 ggaagttaga actcagctgt aaggtgaagg ggggaagtgg gcccgggctg ggggaagaag
     1441 cctccctgta aataggatgc agtactggga ccatttgttc tttgaccccc caacccacct
     1501 ctaagaaata aaaatcagat ctagactgga aaaaaaaaaa aaaaaaaaaa aaa
//
