LOCUS       XM_039081413            1964 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus roundabout guidance receptor 3
            (Robo3), transcript variant X15, mRNA.
ACCESSION   XM_039081413
VERSION     XM_039081413.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1964
                     /gene="Robo3"
                     /note="roundabout guidance receptor 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:315564"
                     /db_xref="RGD:1311018"
     CDS             353..1738
                     /gene="Robo3"
                     /codon_start=1
                     /product="roundabout homolog 3 isoform X11"
                     /protein_id="XP_038937341.1"
                     /db_xref="GeneID:315564"
                     /db_xref="RGD:1311018"
                     /translation="MGLGPAAYPWLADSWPHPSRSPSAQEPRGSCCPSNPDPDDRYYN
                     EAGISLYLAQTARGANAPGEGPVYSTIDPVGEELQTFHGGFPQHSSGDPSTWSQYAPP
                     EWSEGDSGARGGKGKLLGKPVQMPSLSWPEALPPPPPSCELSCPEGPEEELKGSSDLE
                     EWCPPMPEKKHLIDSRSSGACMVAPARGETPSPTSSYGQQSTATLTPSPPDPPQPPSD
                     IPHLHQMPRRVPLGPSSPLSVSQPALSSHDGRPVGLGAGPIVSYHPSPSPVPSTASSA
                     PGRTRQVTGEMTPPLHGHRARIRKKTKALPHRREHSPGDLPPPPLPPPEEETSWPLGL
                     RAAGSMSSLEREHSGERRVAQAVPLGAQPPGAQRGPHPDAALLGCAAEEAWLPYGRPS
                     FLSHGQGTSTCSTAGSNSSRGSNSSRGSRGSRGPGRSRSRSQSQSQRPGRNRRQVGVK
                     GLKKQSKGLGG"
ORIGIN      
        1 actggggtta gctgggctta cggatccgga atggcgcctt ccgagcccct ggatttcggg
       61 ttcgtctcct tttatctctc tgacccccac agcattccct ccggttgcgg agcccgggcc
      121 tgaggtcagc gaggggctgg cggaacggtt gtctagggtg ctgcggaagc ctgctttcct
      181 ggctggcagc agcgcggcct gtggggcgct gcttctcggg ctctgcgccg ccctctatcg
      241 gcgccagaag caacgcaaag agctcagtca ttataccgcc tcctttgcct acacacctgc
      301 agtgtccttt ccacactcag agggcctttc tggatccagt tccaggccac ccatgggcct
      361 tggccctgct gcctacccat ggctggcaga ctcctggccc cacccatctc gaagtccctc
      421 agctcaggaa ccccggggga gctgctgccc cagcaatcct gatccagatg atagatacta
      481 caatgaggca ggaatctccc tgtacttggc tcagactgca cggggtgcta atgcccctgg
      541 cgagggtcct gtctacagca ccattgaccc agtaggggaa gagctacaga ccttccacgg
      601 agggttccct caacattctt ctggggaccc aagcacctgg agccagtatg ctccccccga
      661 atggagcgag ggggacagtg gagccagggg aggcaaaggg aagcttctag gcaaacctgt
      721 gcagatgccc tctttgagct ggccagaagc cctgccgcca cctccccctt cctgtgaatt
      781 gagctgccca gaggggcctg aggaggagct gaagggcagt tcagatctgg aagagtggtg
      841 cccaccaatg cctgagaaaa aacacttgat tgactcacgt tccagtggtg cgtgcatggt
      901 ggctccagcc cgaggggaaa ctccctcccc tacctcttct tacggacagc agtccacagc
      961 cactcttacc ccctcacctc ctgaccctcc ccagccccct agcgacatcc cacatctcca
     1021 tcagatgccc aggagggtgc cccttggacc aagttctcct ctcagcgtat cccagcctgc
     1081 tctgagtagc catgatggaa ggcctgttgg cctgggtgct ggccctatag tctcttatca
     1141 ccctagcccc agtcctgtcc ctagtacagc cagcagtgca ccagggagaa ctcgccaggt
     1201 aactggagag atgactcccc cactccatgg acaccgtgcc cgaatccgga agaaaaccaa
     1261 ggctcttcca catagaaggg aacacagtcc tggggacttg cccccaccac ccttgccacc
     1321 accagaggaa gagacgagct ggcccttggg tctgagagca gcaggcagca tgtcttccct
     1381 agagcgagag cacagtgggg agaggagagt ggcccaggca gtgcctctag gggcccaacc
     1441 tccaggggcc caacgtggcc cccaccctga tgctgcactt ctgggttgtg ctgcagaaga
     1501 ggcctggctt ccatacggca gaccaagctt cctgagccat ggccagggca ccagcacctg
     1561 ctctaccgct ggtagcaatt cttctagggg ttccaacagc tctcgaggtt ctcggggctc
     1621 tcggggccct ggacgcagcc gaagccggag ccagagtcag agccagaggc cgggacggaa
     1681 tcgccgacag gtgggagtca aaggactaaa gaagcagagc aaaggactgg gaggataggc
     1741 cagagggaaa cagggaagaa gtaaagggct ccagaggaga ctgcaaagag aagacccagg
     1801 agggctgtaa gggaggagtc cttcagaaga actgacaagg gctgagggcg taatgacaca
     1861 aaagaagaga gtctgggtcc accacaggag gagtagacta gaaaaaaggc tggtccctcc
     1921 tgtgcatgtc cagtgacaga agagcaggcc ctccctcccg gcat
//
