LOCUS       NM_001011890            1853 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Rattus norvegicus RNA binding protein with serine rich domain 1
            (Rnps1), mRNA.
ACCESSION   NM_001011890 XM_237758
VERSION     NM_001011890.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1853)
  AUTHORS   Murachelli,A.G., Ebert,J., Basquin,C., Le Hir,H. and Conti,E.
  TITLE     The structure of the ASAP core complex reveals the existence of a
            Pinin-containing PSAP complex
  JOURNAL   Nat Struct Mol Biol 19 (4), 378-386 (2012)
   PUBMED   22388736
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1853)
  AUTHORS   Michelle,L., Cloutier,A., Toutant,J., Shkreta,L., Thibault,P.,
            Durand,M., Garneau,D., Gendron,D., Lapointe,E., Couture,S., Le
            Hir,H., Klinck,R., Elela,S.A., Prinos,P. and Chabot,B.
  TITLE     Proteins associated with the exon junction complex also control the
            alternative splicing of apoptotic regulators
  JOURNAL   Mol Cell Biol 32 (5), 954-967 (2012)
   PUBMED   22203037
REFERENCE   5  (bases 1 to 1853)
  AUTHORS   Gehring,N.H., Kunz,J.B., Neu-Yilik,G., Breit,S., Viegas,M.H.,
            Hentze,M.W. and Kulozik,A.E.
  TITLE     Exon-junction complex components specify distinct routes of
            nonsense-mediated mRNA decay with differential cofactor
            requirements
  JOURNAL   Mol Cell 20 (1), 65-75 (2005)
   PUBMED   16209946
REFERENCE   6  (bases 1 to 1853)
  AUTHORS   Tange,T.O., Nott,A. and Moore,M.J.
  TITLE     The ever-increasing complexities of the exon junction complex
  JOURNAL   Curr Opin Cell Biol 16 (3), 279-284 (2004)
   PUBMED   15145352
  REMARK    Review article
REFERENCE   7  (bases 1 to 1853)
  AUTHORS   Schwerk,C., Prasad,J., Degenhardt,K., Erdjument-Bromage,H.,
            White,E., Tempst,P., Kidd,V.J., Manley,J.L., Lahti,J.M. and
            Reinberg,D.
  TITLE     ASAP, a novel protein complex involved in RNA processing and
            apoptosis
  JOURNAL   Mol Cell Biol 23 (8), 2981-2990 (2003)
   PUBMED   12665594
REFERENCE   8  (bases 1 to 1853)
  AUTHORS   Lykke-Andersen,J., Shu,M.D. and Steitz,J.A.
  TITLE     Communication of the position of exon-exon junctions to the mRNA
            surveillance machinery by the protein RNPS1
  JOURNAL   Science 293 (5536), 1836-1839 (2001)
   PUBMED   11546874
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079014.1.
            
            On Feb 11, 2005 this sequence version replaced XM_237758.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079014.1, SRR8487226.10511.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1853
                     /gene="Rnps1"
                     /note="RNA binding protein with serine rich domain 1"
                     /db_xref="GeneID:287113"
                     /db_xref="RGD:1307522"
     exon            1..63
                     /gene="Rnps1"
                     /inference="alignment:Splign:2.1.0"
     exon            64..244
                     /gene="Rnps1"
                     /inference="alignment:Splign:2.1.0"
     CDS             174..1091
                     /gene="Rnps1"
                     /note="ribonucleic acid binding protein S1; RNA binding
                     protein S1"
                     /codon_start=1
                     /product="RNA-binding protein with serine-rich domain 1"
                     /protein_id="NP_001011890.1"
                     /db_xref="GeneID:287113"
                     /db_xref="RGD:1307522"
                     /translation="MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSK
                     DKGTTKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA
                     SSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKP
                     TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEK
                     ALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRS
                     PRRRSPVRRRSRSPGRRRHRSRSSSNSSR"
     exon            245..400
                     /gene="Rnps1"
                     /inference="alignment:Splign:2.1.0"
     exon            401..592
                     /gene="Rnps1"
                     /inference="alignment:Splign:2.1.0"
     exon            593..695
                     /gene="Rnps1"
                     /inference="alignment:Splign:2.1.0"
     exon            696..849
                     /gene="Rnps1"
                     /inference="alignment:Splign:2.1.0"
     exon            850..991
                     /gene="Rnps1"
                     /inference="alignment:Splign:2.1.0"
     exon            992..1825
                     /gene="Rnps1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacagagttg cgccagcgtc cgggtctgag aagagcggga ggaggtggcg gccttgggaa
       61 gatgctgctc tttggcgtaa attgcaatcg attagggatc gtttctcaga ctcaagttag
      121 aagtgagagt tcagataagt gaggccgaca ttgctgcctt gaagaagggg agaatggatt
      181 tatcaggagt gaaaaagaag agcttgctag gagtcaaaga gaataataaa aagtccagca
      241 ctagggctcc ttctcctacc aaacgaaagg accgctctga tgagaagtcc aaggatcgat
      301 ctaaagataa agggaccact aaagagtcca gtgagaagga tcgtggcaga gataagaccc
      361 ggaagagacg cagtgcttca agcggaagca gcagcaccag gtccaggtcc agctcaacct
      421 ccagctcggg ctccagcacc agcacgggct cgagcagtgg ctctagctcg tcttctgcgt
      481 ccagccgctc aggaagctcc agcacatccc ggagctccag ttccagcagc tcctccggct
      541 ccccaagccc ttctcggcgc agacatgaca acaggcggcg ttcccgctcc aaatccaaac
      601 cacctaaaag agatgaaaaa gagaggaaaa ggcggagccc ttcacctaaa cccaccaaag
      661 tgcacattgg gaggctcacc aggaatgtga ccaaggatca tatcatggaa atattttcta
      721 cttacgggaa aattaaaatg attgacatgc ctgtggaaag gatgcatcct catctatcca
      781 aaggctatgc gtacgtggaa ttcgagaatc cggatgaagc agagaaggca ctgaaacaca
      841 tggatggagg acaaatagat ggccaagaga tcactgctac tgcggtgttg gcaccctggc
      901 ctcgtccacc gcctcggcga ttcagcccac ccaggagaat gcttccaccg cctcccatgt
      961 ggcgtaggtc acccccacgg atgaggagaa ggtctcgatc cccaagacgc aggtcccctg
     1021 tgcgaaggag gtctcgatcg cctggccgcc gccgccacag gagccgatcc agctccaact
     1081 cctcccgata agcagggaca tggattcgcc ctctgtaact tatgttcccc agactcagtt
     1141 ttgtcctttt ctctagccaa aggaggatct gtaaggaagg atcccttacc agggtaggct
     1201 ttgaagacag cagttgagat gtttcctctg caggagggtt ctgccttgta gaggtactgt
     1261 tgattcagga ctgtgcccgt agaggtaccc tgtagttttc tggctagaaa gttcgcccct
     1321 tcagttcttg atagtctgtt cagtagcaga gccaactgga acatagggca gcacaccgtt
     1381 ttccagatga cctaggaccc gtcagacaac ctggccaagc catgctgtgc cacagcagtg
     1441 gaaaggacca agcctctgtc tgttctgtta ggcctgccca tggcccctgc tgagtaccct
     1501 tcaccttcta gggttaaaac ctttgaagga ttcctccata aatggttgtc ttttctgtcc
     1561 cagtgtctct gttactttct aaaattggtg aaccagttct acagggtcct gatgaaacct
     1621 agcccacccc attgtcacct gccattcatg gtgatgtcgc aggttagcct tggcaatgtg
     1681 tgcgttgcct ctttgctttt gttgtacagt cagtactata aaatctgttt tgagttttat
     1741 aactttgtag cattttagat aaggttgtgt ttgtacttgt gtagagtgaa aggactgttg
     1801 aataaaccta gggttagagt gcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//
