LOCUS       NM_001100810            1818 bp    mRNA    linear   ROD 11-DEC-2024
DEFINITION  Rattus norvegicus RNA-binding region (RNP1, RRM) containing 3
            (Rnpc3), mRNA.
ACCESSION   NM_001100810 XM_001073167
VERSION     NM_001100810.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Pessa,H.K., Will,C.L., Meng,X., Schneider,C., Watkins,N.J.,
            Perala,N., Nymark,M., Turunen,J.J., Luhrmann,R. and Frilander,M.J.
  TITLE     Minor spliceosome components are predominantly localized in the
            nucleus
  JOURNAL   Proc Natl Acad Sci U S A 105 (25), 8655-8660 (2008)
   PUBMED   18559850
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   3  (bases 1 to 1818)
  AUTHORS   Will,C.L., Schneider,C., Hossbach,M., Urlaub,H., Rauhut,R.,
            Elbashir,S., Tuschl,T. and Luhrmann,R.
  TITLE     The human 18S U11/U12 snRNP contains a set of novel proteins not
            found in the U2-dependent spliceosome
  JOURNAL   RNA 10 (6), 929-941 (2004)
   PUBMED   15146077
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166571.1.
            
            On Jun 4, 2008 this sequence version replaced XM_001073167.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166571.1, SRR8487231.186011.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q42"
     gene            1..1818
                     /gene="Rnpc3"
                     /note="RNA-binding region (RNP1, RRM) containing 3"
                     /db_xref="GeneID:691538"
                     /db_xref="RGD:1582776"
     exon            1..238
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..1594
                     /gene="Rnpc3"
                     /note="RNA-binding protein 40; RNA-binding motif protein
                     40"
                     /codon_start=1
                     /product="RNA-binding region-containing protein 3"
                     /protein_id="NP_001094280.1"
                     /db_xref="GeneID:691538"
                     /db_xref="RGD:1582776"
                     /translation="MAVPEPSMPLSRGGPGSASLSPPRGDRTLLVRHLPAELTAEEKE
                     DLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKE
                     QDRVHSSCPASNAEKKKRLDDTVENDKEKKEPDVLTVENGIAPNHGLTFPLNSCLKYM
                     YPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYEDYVQLHAP
                     LPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNKLMELANFQPKRPKTVKP
                     RHVRKKRKIKDMLTVPSPASQSLHPVLLPSDVFDQPQPVGNKKIEFNISTNVPAALNK
                     DLETEQNNEEKNSDSPDTGLDDSNTGFGKLFPKPNVNITEEIKEDSDEMPSQFISRRE
                     LEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQ
                     RIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKHD
                     SKEGKRK"
     exon            239..286
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            287..405
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            406..489
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            490..601
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            602..670
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            671..813
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            814..939
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1088
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1250
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1345
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1346..1404
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1537
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1538..1608
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1609..1791
                     /gene="Rnpc3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcagcttgt gcggaaggac tgtctccggc tggttctgcg tggaagatgg cggtgcccga
       61 gccgtcgatg ccactgtcgc gaggaggccc aggttccgct tcgctctctc ctccccgagg
      121 cgaccgcacc ctcctcgtcc ggcacctgcc ggcggagctg acggctgagg agaaggagga
      181 cttactgaag tacttcgggg cgcagtccgt gcgcgtcctg tcagataagg gacgcctgaa
      241 acatacagca tttgctactt tccccaatga aaaagcagct ataaaggcat tgacaagact
      301 ccatcagctg aaacttttag gtcatacttt agttgtcgaa tttgcaaaag agcaagatcg
      361 agttcattcg tcatgtcccg cctcaaacgc agagaaaaag aaaaggttgg atgacactgt
      421 ggaaaatgat aaagagaaga aagagcctga tgttttaaca gtagaaaatg ggattgcacc
      481 aaatcacgga ctgacttttc ctctaaattc atgcctcaaa tacatgtatc caccaccttc
      541 aagcacaatc cttgcgaata tagtaaatgc tctggcaagt gtccctaaat tctacgtcca
      601 ggtgcttcat cttatgaata aaatgaattt gcccacaccg tttggaccga ttactgcacg
      661 acctcctatg tatgaggact atgtgcagtt gcatgcaccc cttccaccta catcacctca
      721 accgcctgag gagcctccct taccagacga ggatgaggat ttatctagta aagaatcaga
      781 atacgaaagc agtgatgagg aggaccgaca gagaatgaac aaactgatgg agctagcaaa
      841 ttttcagccc aaaagaccca aaacagtaaa gccacgccac gtcagaaaaa aacggaaaat
      901 aaaggacatg ttgactgtac cttcaccagc ttcccaaagt ttgcatcctg tgctgttacc
      961 ttcggatgta tttgaccaac cacaacctgt aggtaataaa aaaatcgaat tcaatatatc
     1021 gaccaacgtg cctgcagcat taaacaaaga tttggagaca gaacaaaata atgaggaaaa
     1081 aaattctgat tcaccagaca ctggccttga tgattcaaat acaggatttg gaaaactctt
     1141 ccccaaacct aatgtgaaca tcacagaaga gattaaagag gactctgatg aaatgccctc
     1201 acagtttatt tctagaagag agttggaaaa gggtcgtatt tccagagaag aaatggaaac
     1261 tctttcagtt ttcagaagtt atgaacctgg tgagccaaac tgcagaattt atgtcaagaa
     1321 tttagctaga catgttcagg aaaaggacct taaatttatc tttgggagat acgtcgactt
     1381 ctcttcagaa acacagcgga tcatgtttga tattcgctta atgaaagaag gacgcatgaa
     1441 gggacaagct tttgtaggac ttccaaatga aaaagcagca gccaaagcct tgaaagaagc
     1501 taatggctat gttctattcg ggaagcccat ggtggttcag tttgctcgat ctgccagacc
     1561 aaaacatgat tctaaagaag gaaaacggaa gtgatacaga caataaaggt tccttctgaa
     1621 ttctgtatct ttcaagtact gtggagcatt gagagaagaa attggccgtc tggacaatgg
     1681 aactgtgcgt aacaactttg gaaacattaa aatattacat atcttcaaat tagtgcttgg
     1741 aaatgtattg tactggccta ttgcatatat aataaattat ttttttctca aaaaaaaaaa
     1801 aaaaaaaaaa aaaaaaaa
//
