LOCUS       NM_001107144            4194 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus ring finger protein, transmembrane 2 (Rnft2),
            mRNA.
ACCESSION   NM_001107144 XM_001076855 XM_222209
VERSION     NM_001107144.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4194)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001107144.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.81046.1,
                                           SRR26643288.47996.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               JAXUCZ010000012.1  43990188-43990333
            147-321             JAXUCZ010000012.1  43992451-43992625
            322-380             JAXUCZ010000012.1  43993089-43993147
            381-850             JAXUCZ010000012.1  43998475-43998944
            851-927             JAXUCZ010000012.1  44002093-44002169
            928-1028            JAXUCZ010000012.1  44003912-44004012
            1029-1182           JAXUCZ010000012.1  44008457-44008610
            1183-1332           JAXUCZ010000012.1  44036139-44036288
            1333-1398           JAXUCZ010000012.1  44037531-44037596
            1399-1500           JAXUCZ010000012.1  44037727-44037828
            1501-4194           JAXUCZ010000012.1  44045515-44048208
FEATURES             Location/Qualifiers
     source          1..4194
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..4194
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /note="ring finger protein, transmembrane 2"
                     /db_xref="GeneID:304521"
                     /db_xref="RGD:1560195"
     exon            1..146
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     exon            147..321
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     CDS             298..1635
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /note="transmembrane protein 118; RING finger and
                     transmembrane domain-containing protein 2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNFT2"
                     /protein_id="NP_001100614.1"
                     /db_xref="GeneID:304521"
                     /db_xref="RGD:1560195"
                     /translation="MWLLAAHQVLRKMQRRHSSNTDNIPPERSRSQALSPEASVDEGG
                     VFESLKAEPASPPTLFSGLAGGLPASPFPAGLVLGSTAGGGDVFIPMPATRDEAGGRS
                     TEGSTYHHRQAHHHFHHGAHRGGSLLQHVGGDHRGHSEEGVDEQPGTPAPALSELKAV
                     ICWLQKGLPFILILLAKLCFQHKLGIAVCIGMASTFAYANSALREQVSLKEKRSVLVI
                     LWILAFLAGNTLYVLYTFSSQQLYSSLIFLKPNLETLDFFDLLWIVGIADFVLKYITI
                     ALKCLIVALPKIILAVKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSDSYFLG
                     GVLIILYSLCKSFDICGRVGGLRKALKLLCTSQNYGVRATGQQCTEAGAVCAICQAEF
                     RDPMILLCQHVFCEECLCLWLDRERTCPLCRSVAVDTLRCWKDGATSAHLQVY"
     exon            322..380
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     exon            381..850
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     exon            851..927
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1028
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1182
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1332
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     exon            1333..1398
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1500
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..4194
                     /gene="Rnft2"
                     /gene_synonym="RGD1560195; Tmem118"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagaggcagg cctcactgtg cctgggtcct agcgccgacc atattctctg tggctgaacc
       61 ggccggaagt cacgtgccgc cctggtcacg ccagtgattg gctgggctgg attagcagag
      121 gccgtgattg ccgaagtgtc tggcaggcct gatgtctctg atgagtctcc tgccagcact
      181 tccctctgaa gaagaggagg aagagaaggc ctgctctctc tgggacccag tgaccgcatc
      241 gcatcaggaa ccctgaatgt ccacggcacg tttcgtcaac atggagttct gaggtccatg
      301 tggctccttg cagcgcacca ggtgctaagg aaaatgcaga gacgccacag tagcaacacg
      361 gacaacattc cacctgaaag aagtcgcagc caggcgctca gccctgaggc cagtgtggat
      421 gaaggtggtg tatttgagag cctgaaggca gagccggcct ccccccctac gctcttctca
      481 ggcctggcag gtggccttcc tgccagtccc ttcccagcag gcctggtgct gggctccaca
      541 gccggtggcg gggatgtctt catccctatg ccggccacca gggatgaggc cggtggccgc
      601 agcaccgaag gaagcaccta ccaccaccgc caggcccatc accacttcca ccacggtgcc
      661 caccgcgggg gctccctgct gcagcacgtg ggaggggacc accgcggaca ctcggaggaa
      721 ggggtcgacg agcagcccgg aactccggca cccgctctgt ctgagctgaa ggctgtgatc
      781 tgctggcttc agaaaggact gccctttatc ctcatcctgc tggccaaact gtgtttccag
      841 cacaagctgg gcattgctgt gtgcatcgga atggccagca ccttcgccta tgcaaactcc
      901 gccctccggg agcaggtgtc cttgaaggag aagagatcag ttctggtcat cttgtggatt
      961 ctggccttcc tggcagggaa cacactgtat gttctttata ccttcagctc ccagcagctc
     1021 tacagcagcc tcatattcct gaagcccaac ctggagacgc tggacttttt tgacctgctg
     1081 tggattgtgg ggatcgctga ctttgtgctg aagtacatca ccatcgccct caagtgcctc
     1141 atcgtggccc tgcccaagat catcctggcc gtcaagtcca agggaaagtt ttatctggtc
     1201 atcgaggagc tgagccagct gttcaggtcg cttgtcccca tccagctgtg gtacaagtac
     1261 atcatggggg acgactcctc cgacagctac ttcctaggag gggtcctgat catcctctac
     1321 agtctctgca agtcgttcga catctgcggt cgcgtgggcg gactcaggaa agcactgaag
     1381 ctcctttgca cctcccagaa ttacggggtc agagccacag ggcagcagtg cacggaggct
     1441 ggcgccgtct gcgccatctg ccaggctgag ttccgagacc ccatgattct cctgtgccag
     1501 cacgtgttct gtgaagagtg cctctgccta tggctggaca gggagcgcac ctgcccgctc
     1561 tgccgctccg ttgccgtgga taccctgcgt tgctggaagg atggggccac gtctgcacac
     1621 ttgcaggtgt actaagctaa acacaagtgt ctggggagat ggggagggcc cagcattgct
     1681 gagcccagcc ctgagggtcc ctgggaaaga gcctccagga cttcctcctg ccttccacca
     1741 cctctacctg atggccccag ggcccccacg ccaacacttc ctcaccaccc tggtacagtg
     1801 tgtgcatcct accccactgg gaaggggagc cctcctcact cagacttggc ttcgccacag
     1861 gtaggtggtc tgtcccctgt aagtggagaa attactgata cacaatctcc ccttatttaa
     1921 cctgcttcca gctactggta ctcaatgctg aaaactggtg tgagctgaga gggtacagtc
     1981 tgacccaggt ctgcacacaa gagccactgg gagaatgtcc aacatgtgaa caccaggctt
     2041 cacccaccta gctgacttca cagcatacag gcagtgaggt cgaatggtag gagccttaga
     2101 aagaccggac cttggtgatt ccttttttcc tgggccctgc ctgggacagt cagtctcaga
     2161 agggtcagct cgggtccaga agtacatgcc acctgccttc tgtcatcttc cgcccttctc
     2221 ttctgcattg tccctcactg acagctcagg cctgtgcaga gctctcatgg acatggctgc
     2281 ctctcccacc ccaggagcct tcagtccatg tcgtaagtag cacagggctc cggagcgatc
     2341 catttcccat ccctctctct agtgaggtaa ttagctcaga gtctctgaaa agactgcttc
     2401 acatccttaa ccaaacgcct gagcgggacg aggggagcat caggagcagc tcgcaggtgc
     2461 gcttcaccgc agcttctccc ccccaccccc ccaccccccg gaagctcact gattggaaac
     2521 ctgggacgaa atagcacagg tgaccacaca gaagcctctg gaattctgct gcctccacca
     2581 gctcccagct ctgccctctc atggtgggca tcgcacagca ggccagccca agccacattt
     2641 cagaaagctg caaggccggt gggcaggtta gcatacactc catgggtggg atgggggggg
     2701 cggtcctcgg tgctggtcac ctcctctctg tagattcagg actcctgggc acccctgctg
     2761 ggacttcttc ctctgcatgg tctccctggc actttcttgg tagcagtaac acagcctttg
     2821 caggggacca gggcatcctt caagctctgt tactatggca atggccatga tgttaagcag
     2881 tcccactgtc tggatgttct aagagggaag ggagattgac ccttctgtct ggtttgtcgg
     2941 ggtacttagg agaaccgcct gcaactgcct agcaagcgct ctaccactga gctaaatccc
     3001 caaccccctg caactggttt ttatcaaaga cattgctttg cctgagacac tgtcagcatt
     3061 gtggaggggt tggagctgca gggggtgcac agaagtgtag catgggatga atcagaggca
     3121 gccattgggg ttgggattgg aagcctgact tcaaaccttg tgatatccct ataccctgta
     3181 tccaccccca cccactccgt ggggtcataa aacctagcat gtttacttgc tgggaccgag
     3241 aaaactagca acaggactga agatgtagct cggtgggtag aggactgggc cagcatgcca
     3301 gcagccctga gttccgtggc cagcaccaca taaactaagc atggcggcgc acacctgaat
     3361 tgcctgctct gggtggggga ggcaggggga tcagaaggac aaggtctttc cttggctaca
     3421 tagcaagttc cagggcagcc cagcctccac gagactccat tttaaaaggg ggaaacaggt
     3481 aaaccaacag tgtgggttac ttggtgcacc aagggtttaa actgcccccg cattacttct
     3541 ctaacatcat gtaaatataa accatgcctc tgctatacaa ggagcatccc cgggacagtg
     3601 agatgctctt cagttcccgt ccttccaggg aacaccctat ctgaggagct cttcaggcag
     3661 agctccccag gcaccaggct gtggaaagtg gaccctggag aacactccca gttcacctgc
     3721 agcaccacgt cggtcagggg aggatcaggg gtcagaatct ggctcccagt gttttgtgga
     3781 tcacagactc aaatccctga gtccacaaag tcttgtttgt gggtgagaac ctgagagtcc
     3841 taagttggca gaggccaatg agagggcaaa tgttaagagt ctttgccctg agctcttaag
     3901 agtacccagg tccaatccca gcactcacac caaggggttc agaactcaga actccagctc
     3961 cagggacaca aacgtcatcc agaaccatga gggaagaaga aaagtctgct ttgggcccga
     4021 gcctaacagg cccagcacct tccaaaggga acgacacagg tacagagccc tgggacgacc
     4081 gtccccctgc tgaagaggaa gtgggcggcc agcagtctga ggtcttctgt gcttttgctt
     4141 tgggacatgt ctttggtgtc gctgagaacc ttctgccaat aaacctcccc tgtg
//
