LOCUS       NM_001398804            2013 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ring finger protein, transmembrane 1 (Rnft1),
            mRNA.
ACCESSION   NM_001398804 XM_003750899
VERSION     NM_001398804.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Kaneko,M., Iwase,I., Yamasaki,Y., Takai,T., Wu,Y., Kanemoto,S.,
            Matsuhisa,K., Asada,R., Okuma,Y., Watanabe,T., Imaizumi,K. and
            Nomura,Y.
  TITLE     Genome-wide identification and gene expression profiling of
            ubiquitin ligases for endoplasmic reticulum protein degradation
  JOURNAL   Sci Rep 6, 30955 (2016)
   PUBMED   27485036
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 23, 2021 this sequence version replaced XM_003750899.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1949097.1,
                                           SRR26360181.1623439.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-159               JAXUCZ010000010.1  71807424-71807582
            160-610             JAXUCZ010000010.1  71809065-71809515
            611-687             JAXUCZ010000010.1  71809671-71809747
            688-788             JAXUCZ010000010.1  71811426-71811526
            789-942             JAXUCZ010000010.1  71813106-71813259
            943-1101            JAXUCZ010000010.1  71814078-71814236
            1102-1167           JAXUCZ010000010.1  71815432-71815497
            1168-1269           JAXUCZ010000010.1  71817226-71817327
            1270-2013           JAXUCZ010000010.1  71817797-71818540
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..2013
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /note="ring finger protein, transmembrane 1"
                     /db_xref="GeneID:360595"
                     /db_xref="RGD:1562411"
     exon            1..159
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            160..610
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /inference="alignment:Splign:2.1.0"
     CDS             211..1404
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /EC_number="2.3.2.27"
                     /note="ring finger protein, transmembrane 1, pseudogene 1;
                     RING finger and transmembrane domain-containing protein 1"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNFT1"
                     /protein_id="NP_001385733.1"
                     /db_xref="GeneID:360595"
                     /db_xref="RGD:1562411"
                     /translation="MQTSCNQLHDPPGSAHDEGAAASQCVHPSRSTEGSLHPGDVHIQ
                     INSGPKEYSESPSSRNTRSGVCTCAHGCVHSRFRSYSHSEARPPDDFATESGEHGSGS
                     FSEFRYLFKWLQKSLPYILILGIKLVMQHITGISLGIGLLTTFMYANKSIVNQVFLRE
                     RSSKLRCAWLLVFLAGSSVLLYYTFHSQSLHYSLIFLNPTLEQLSFWEVLWIVGITDF
                     ILKFFFMGLKCLVLLVPSFIVPFKSKGYWYMLLEELCQYYRIFVPIPVWFRYLISYGE
                     FGNVTTWSLGILLALLYLILKLLDFFGHLRTFRQVLRIFFTRPSYGVPASKRQCSDMD
                     GICPICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVISERINKWKDGATSS
                     HLQMY"
     exon            611..687
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            688..788
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            789..942
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1101
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1167
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1269
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1270..2013
                     /gene="Rnft1"
                     /gene_synonym="RGD1562411; Rnft1-ps1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacgacgtct agggaacgcg cgcgccgccg cggggccagg ccgagcgctg ctggtgctgg
       61 tggcgtccga ggctgaaggc ttggcgagaa gggcttgcgg ccgcgtgtgg ggctgtcggt
      121 attgtggctg ccgaggctac ccgctcctgg tcatgagagg agaaagagtc ctgaagcaaa
      181 gacattttag agaaaaaata ttcaagggcc atgcagacca gctgtaacca actccatgat
      241 cctccaggca gtgcacatga tgagggcgct gcagcctccc agtgtgttca cccatcaagg
      301 tcgacagaag gttctcttca ccctggagac gtacacatcc aaataaactc aggacctaaa
      361 gaatactctg aaagtccaag ctctagaaac acacggtcgg gtgtctgtac ctgtgcccat
      421 ggatgtgtgc atagtcgttt ccggagttac tcccacagtg aagcaaggcc acctgatgat
      481 tttgccacag agtctgggga acatggaagt ggctccttct cagaattccg atatctcttc
      541 aagtggttgc aaaaaagtct tccttatatt ttgattttag gcattaaact tgttatgcag
      601 catataacag gaatttctct tggaattggg ctgctaacaa cttttatgta tgcaaacaaa
      661 agcattgtaa atcaggtttt tctaagagaa cggtcatcaa agcttcggtg tgcttggcta
      721 ttggtgttcc tggcaggttc ttccgtcctc ttatattaca ccttccattc tcagtcgctt
      781 cattacagct tgattttctt aaatcctaca ctcgaacagt tgagcttctg ggaagttctt
      841 tggatcgttg ggattacaga cttcattcta aaattctttt tcatgggttt aaaatgcttg
      901 gttttgctgg tgccttcttt catcgtgcct ttcaaatcaa agggatattg gtacatgctt
      961 ttagaagaat tgtgtcagta ttaccgaatt tttgttccca taccagtttg gtttcggtac
     1021 cttataagct atggggagtt tggtaatgta actacatgga gtcttgggat attgctagct
     1081 ttactctacc tcatactaaa acttttggac ttttttggac atttgagaac tttcagacag
     1141 gtcttacgaa tattttttac acgaccaagt tatggagtgc ctgccagcaa gagacagtgt
     1201 tcggatatgg atggtatttg tccaatatgt caagctgaat ttcagaagcc agttcttctc
     1261 ttttgtcagc atatattctg tgaagaatgt attaccttat ggtttaacag agagaaaaca
     1321 tgtcccctgt gcagaactgt gatttcagaa cgtataaaca aatggaaaga tggggccact
     1381 tcatctcacc ttcagatgta ctgagttgta caaactgtta aggcctcaag acactaattt
     1441 tatctggttt ggtaactatt gataaaggca ttgataaagg taatttgtct ccagcagtag
     1501 aaaacaaatt gtcttcccag gagtagaaaa atggttttag ggtatcacaa gacatgtttg
     1561 tagttcagtt tctcaaaaga ttaagtgcaa gagccctgca tttttaaact atatattcac
     1621 cttaagaata tgcaacattt attccactta tttgacagat aattgcagtg ttatattgga
     1681 aatgtggttt cttattaata ataccaaaac agcaattaga aactagaact agccatttta
     1741 aaggggttcg ggtactgttt cctgacatgg ttctcagaat aaagattctg catagtattt
     1801 taaaatgtat ctgaaacaat tttcagactt ttataattcc cattctaaaa atgcttaaat
     1861 ttttcataaa attgtatttt taaatgaaag ttctaaatgc tatattttac ctataacaca
     1921 ttttctaagt gaagatttac tgaggatgat atattttaat actgtattat gctctatgac
     1981 tagtaatcag tgagaataaa tgacttagat cca
//
