LOCUS       NM_001024795            1734 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ring finger protein 44 (Rnf44), mRNA.
ACCESSION   NM_001024795 XM_341494
VERSION     NM_001024795.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1734)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098030.1.
            
            On Jun 10, 2005 this sequence version replaced XM_341494.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098030.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132265, SAMD00132266
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..1734
                     /gene="Rnf44"
                     /note="ring finger protein 44"
                     /db_xref="GeneID:361212"
                     /db_xref="RGD:1307212"
     exon            1..230
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     exon            231..381
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     exon            382..513
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     CDS             460..1512
                     /gene="Rnf44"
                     /codon_start=1
                     /product="RING finger protein 44"
                     /protein_id="NP_001019966.1"
                     /db_xref="GeneID:361212"
                     /db_xref="RGD:1307212"
                     /translation="MLHPATQQSPFMVDLHDQVHQGPVPLSYTVTTVTTQGFPLPASQ
                     HIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPVPYHTYPHLISSDHYIL
                     HPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSAT
                     GPTLSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSY
                     YPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKA
                     DIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRT
                     CPICRADASEVPREAE"
     exon            514..681
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     exon            682..855
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     exon            856..1017
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1139
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     exon            1140..1227
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1349
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     exon            1350..1449
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
     exon            1450..1697
                     /gene="Rnf44"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagccattgg tctcttcagc catctgggtt gtcccagctt tttaaaggcg ccgcgaaacg
       61 gaacagaaaa cgagagtcga gaggcgaggt gagctatgag gtcatcgcag gcctgcaggg
      121 ctcgggagtg acgtcatctc cgggaagtgt gcttgctggg ctgagagcgg tcttctcacc
      181 tcggctgcct gagaggctgc gtgccccaca aaggccgcgg ccctaagaag ggttgtgagc
      241 cccggtccag cccctccatc tccctgccct cctgatgagg ccatgggctc tggcagtgac
      301 taagtggccg ccctctgccc ccgtgggtca ctgtcgagtc tctacgagac ctagcagcag
      361 cccaggccag ctctggggaa gcagctgctg ccccgaccgc cacacctctc tgtagaggag
      421 caccgagctt cagaagctcc tgccggcagg agcccccgaa tgctgcaccc agccacccag
      481 cagagcccgt tcatggttga tctccacgac caggtgcacc agggacctgt ccctctgtcc
      541 tacacagtca ccacagtgac aacccaaggc ttccctttgc ctgcaagcca acatatccct
      601 ggctgcagtg cccagcagct cccagcatgc tccgtgatgt tcagtgggca gcactacccc
      661 ctctgctgcc tcccgcctcc gctgatccag gcgtgcacca tgcagcagct ccccgtgccc
      721 taccacacct acccccacct catctccagt gaccactaca tccttcaccc cccaccaccg
      781 gccccgccgc cccaacctac ccacatggcc ccgcttgggc agtttgtatc cctgcagacc
      841 cagcacccac gtatgcccct gcagcggctg gacaatgaga tggaccttcg aggagatcag
      901 caccccttgg gtagctttac ttactccacc tctgccactg gccccacctt gtcgccttca
      961 gtgccccttc actacctacc ccatgatcca ctgcaccagg agctgtcctt tggtgttcca
     1021 tattcccaca tgatgccacg aagactgagc acacaaagat accgcctgca acagccgctg
     1081 ccaccacccc caccgccgcc tccaccatcg tattacccaa gcttcctccc ctacttcctt
     1141 tcaatgctgc caatgtcacc aaccaccgtg ggccctacca tcagcctgga cctggatgtg
     1201 gatgacgtgg agatggagaa ctatgaggct ctcctgaacc tggctgagag gctaggagat
     1261 gccaagcccc gaggcctcac caaagcagac atagagcagc tgccgtcata ccgctttaac
     1321 cctgacagtc accagtctga gcagacgctg tgtgtggtct gcttcagtga cttcgaggtg
     1381 cggcagctgc tccgagttct cccctgcaac cacgagttcc atgccaagtg tgttgacaag
     1441 tggttgaagg ccaaccggac ctgtcccatt tgccgggcgg atgcctccga ggtgcccagg
     1501 gaggccgagt gaggctccac agccaccaca agagccctgc ccaaagctcc ggagacgggt
     1561 ggggggaagc agggagtggc ccagggagaa ctgtaaggga ggggccaggc ctgtcagcgt
     1621 tcccacctgc tactccagag ctggtgccag ggtcagccct ggagaagccc ctgcaataag
     1681 cccctgcgtt tgccaagaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//
