LOCUS       NM_134374               2001 bp    mRNA    linear   ROD 16-FEB-2025
DEFINITION  Rattus norvegicus ring finger protein 39 (Rnf39), mRNA.
ACCESSION   NM_134374
VERSION     NM_134374.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Liu,J., Liu,W., Li,H., Deng,Q., Yang,M., Li,X. and Liang,Z.
  TITLE     Identification of key genes and pathways associated with
            cholangiocarcinoma development based on weighted gene correlation
            network analysis
  JOURNAL   PeerJ 7, e7968 (2019)
   PUBMED   31687280
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
REFERENCE   3  (bases 1 to 2001)
  AUTHORS   Matsuo,R., Asada,A., Fujitani,K. and Inokuchi,K.
  TITLE     LIRF, a gene induced during hippocampal long-term potentiation as
            an immediate-early gene, encodes a novel RING finger protein
  JOURNAL   Biochem Biophys Res Commun 289 (2), 479-484 (2001)
   PUBMED   11716498
REFERENCE   4  (bases 1 to 2001)
  AUTHORS   Matsuo,R., Murayama,A., Saitoh,Y., Sakaki,Y. and Inokuchi,K.
  TITLE     Identification and cataloging of genes induced by long-lasting
            long-term potentiation in awake rats
  JOURNAL   J Neurochem 74 (6), 2239-2249 (2000)
   PUBMED   10820183
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX883051.1.
            
            On Oct 17, 2009 this sequence version replaced NM_134374.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB070897.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760494 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-533               BX883051.1         339309-339841
            534-556             BX883051.1         341593-341615
            557-648             BX883051.1         341837-341928
            649-2001            BX883051.1         343446-344798
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..2001
                     /gene="Rnf39"
                     /gene_synonym="Hzfw1; Lirf"
                     /note="ring finger protein 39"
                     /db_xref="GeneID:171387"
                     /db_xref="RGD:628854"
     exon            1..533
                     /gene="Rnf39"
                     /gene_synonym="Hzfw1; Lirf"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..1229
                     /gene="Rnf39"
                     /gene_synonym="Hzfw1; Lirf"
                     /EC_number="2.3.2.27"
                     /note="LTP-induced RING finger protein"
                     /codon_start=1
                     /product="RING finger protein 39"
                     /protein_id="NP_599201.1"
                     /db_xref="GeneID:171387"
                     /db_xref="RGD:628854"
                     /translation="MEVPELGPGLVERLEQLATCPLCGGPFEDPVLLACEHSFCRSCL
                     ARCWGSPAAPGSEEATPSCPCCGQPCPRRSLRSNVRLAVEVRISRGLREKLAEPGART
                     GRRRGGRIPTMGCLDPQGEDMRKTWRRFDVPVPKSSNSEEDLPEDYPVVKNMLHRLTA
                     DLTLDPRTAHRDLLISSDYRGVSLAPPGTPVPLDSPERFDRLRAVLGAQGFASGRHCW
                     EVETAEGACFRDSLAKDEDAGESCYAVGAAGESVTRKGLIKLCPSEAIWAVEGRGGRL
                     WALTAPEPTLLGGARPPPQRIRVDLDWERGRVAFYDGRSLDLLFAFQAPGPLGERVFP
                     LLCTCDPRAPLRIVPGEA"
     exon            534..556
                     /gene="Rnf39"
                     /gene_synonym="Hzfw1; Lirf"
                     /inference="alignment:Splign:2.1.0"
     exon            557..648
                     /gene="Rnf39"
                     /gene_synonym="Hzfw1; Lirf"
                     /inference="alignment:Splign:2.1.0"
     exon            649..2001
                     /gene="Rnf39"
                     /gene_synonym="Hzfw1; Lirf"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagtccgctc tgggtaacca aggcagcccg ggagaggggt agataggggg tgcaaagtga
       61 atgagggagg cgcagcgagg ggcgtcgagt cagcacgcag cgggcgtggt ccgccacttg
      121 cgagctccgg ggcggctgcg aactaggttg cgtcgggacc cctgctttcc atggaggttc
      181 ccgagctggg cccggggttg gtggagcgtc tggagcagct ggcgacgtgt ccgctgtgcg
      241 ggggcccctt cgaggaccca gtcctgctgg cgtgcgagca cagcttctgc cgttcgtgct
      301 tggcgcgctg ctgggggtcc ccggcggcgc ccggctcgga ggaggcgacc ccgtcctgcc
      361 cctgctgtgg tcagccgtgc cccagacgca gcctgaggtc taacgtgcga cttgcagtgg
      421 aggtgcgcat cagccgcggg ctgcgtgaga aactggccga gcccggggcc cggaccggga
      481 gacgacgcgg cggccgcatc cccaccatgg gctgcctgga tccccaagga gaggatatga
      541 gaaagacatg gagacgattc gatgtcccgg tacccaagtc atctaactca gaggaggatc
      601 tccctgaaga ttaccccgtg gtaaaaaaca tgcttcacag actgacagct gacctgacgc
      661 tcgaccctcg cactgcacat cgtgatctgc tcatctcctc tgactaccgc ggcgtgagtc
      721 tggctccacc cggaacgcct gtgccgctgg acagccccga gcgcttcgat cggctccggg
      781 ctgtgttggg tgcgcagggc ttcgcgtcag gtcgccactg ctgggaggtg gagaccgcgg
      841 aaggcgcgtg cttcagagac tctctggcga aggatgagga cgcaggagag agctgctacg
      901 ctgtgggcgc tgcgggggag tccgtgacgc gcaagggcct catcaagctg tgcccatccg
      961 aggctatatg ggccgtggag ggccgcggcg gccgcttgtg ggcgctcacg gctccagagc
     1021 ccactctact aggtggcgcc aggcccccgc cgcagcgcat tcgcgtggac ttggactggg
     1081 agcggggtcg tgtggccttc tatgatggcc gctcattgga cttgctcttc gccttccagg
     1141 cgccgggccc gctcggggag cgtgtcttcc cactgctctg cacttgtgac ccccgcgccc
     1201 cactgcgtat tgtgccagga gaagcctgag cttcaggtct ctagttccta tcctagccta
     1261 gtctggatga cctcgaggtt acttctgttc ggtgcagtaa tccccacata tctcagcggc
     1321 cttgtctgtg cacccattgg agcaggagta ttaataagca ccatttgccc actcatactt
     1381 tctcccaaat caaaagctca actggcttgt acatccaccc gtgcctttaa gccagcctag
     1441 agctgagtct ccatgatcta agacctttct cttgtatctt ttttctgtac cattctaggc
     1501 caggatagag aaagaggctc tgtaccacca gtgttgggaa acagtcctaa tttacctcca
     1561 atcccaaaag gctcagggcc tgatccacag caggaatttc ctgctcttgt ccactcttga
     1621 ggattctcct caaaaaaaaa aaaaaaaaaa aaaaagtcct ccaaaaacaa gacacttaac
     1681 tcatagctaa gacactcagc tcagacctga agcctaaaac ataaattctg ggatgtgtat
     1741 gcaagccagt ctaccttcca tttatgactg tttcctatgc tagtggcctt ttgccatgaa
     1801 caccctcttg gaactttatc ttgcacataa aagaactaat ggtgctacct cccttctcag
     1861 gctgggggca actcagacat cccaaacatt ctgtatagcc cccatccttc ccttgtgtat
     1921 aaatgggcct gtatttaaca cgttgtgcaa tgttgggtta tttattttgt gcatctgtgt
     1981 caataaatga gatctaagtg g
//
