LOCUS       NM_134467               5361 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus ring finger protein 38 (Rnf38), mRNA.
ACCESSION   NM_134467 XM_008763667
VERSION     NM_134467.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5361)
  AUTHORS   Sheren,J.E. and Kassenbrock,C.K.
  TITLE     RNF38 encodes a nuclear ubiquitin protein ligase that modifies p53
  JOURNAL   Biochem Biophys Res Commun 440 (4), 473-478 (2013)
   PUBMED   23973461
REFERENCE   2  (bases 1 to 5361)
  AUTHORS   Zarsky,H.A., Tarnasky,H.A., Cheng,M. and van der Hoorn,F.A.
  TITLE     Novel RING finger protein OIP1 binds to conserved amino acid
            repeats in sperm tail protein ODF1
  JOURNAL   Biol Reprod 68 (2), 543-552 (2003)
   PUBMED   12533418
  REMARK    Erratum:[Biol Reprod. 2003 Oct;69(4):1447]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Jun 4, 2021 this sequence version replaced
            XM_008763667.3, NM_134467.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-379               JAXUCZ010000005.1  63262759-63263137   c
            380-450             JAXUCZ010000005.1  63215979-63216049   c
            451-600             JAXUCZ010000005.1  63188063-63188212   c
            601-794             JAXUCZ010000005.1  63182193-63182386   c
            795-1008            JAXUCZ010000005.1  63180134-63180347   c
            1009-1176           JAXUCZ010000005.1  63174010-63174177   c
            1177-1347           JAXUCZ010000005.1  63172838-63173008   c
            1348-1509           JAXUCZ010000005.1  63170872-63171033   c
            1510-1616           JAXUCZ010000005.1  63169650-63169756   c
            1617-1701           JAXUCZ010000005.1  63167288-63167372   c
            1702-1823           JAXUCZ010000005.1  63164037-63164158   c
            1824-1923           JAXUCZ010000005.1  63159900-63159999   c
            1924-5361           JAXUCZ010000005.1  63154507-63157944   c
FEATURES             Location/Qualifiers
     source          1..5361
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..5361
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /note="ring finger protein 38"
                     /db_xref="GeneID:171501"
                     /db_xref="RGD:621856"
     exon            1..379
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..1986
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /EC_number="2.3.2.27"
                     /note="RING finger protein OIP1"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF38"
                     /protein_id="NP_604462.2"
                     /db_xref="GeneID:171501"
                     /db_xref="RGD:621856"
                     /translation="MSGSAAAAVAVAAATSAAAAAAAHFQPRPSSPRPGPAEIGPPRR
                     PRPPPPPPPPRPEPITAGRLSPPGHGSLRSGAQGVGACGRAPGAGSVGASFQCQSIHH
                     DHICHDDSDKISPGANSAPLPGHPNKVICERVRLPSLFPLLPSDQDTTIQEDAHFKAF
                     FQSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPNQHHFSGERC
                     NTPARNRRSPPVRRQRGRRERLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSP
                     RLLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQV
                     PGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLLHPPHLSPHHP
                     PHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLQVGSFTYPPSAHPPTLPPSAPLQ
                     FLTHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPVPPPTYHPSLLPYVLSMLPVPP
                     TVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPSNHQS
                     EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE"
     exon            380..450
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            451..600
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            601..794
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            795..1008
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1176
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1177..1347
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1348..1509
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1616
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1617..1701
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1702..1823
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1824..1923
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1924..5361
                     /gene="Rnf38"
                     /gene_synonym="Oip1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgggagcc gcctccgtcg ccgccacagc ctccttcgcc gccggtccgg gcccaggcag
       61 cgcccgccgc gccggagtcg agtcgcagtc cgagccactg cccgcggccc cgccatgagc
      121 ggaagcgccg ccgccgcggt cgcggtcgcc gccgccacct cagccgccgc cgccgccgcc
      181 gcgcacttcc agcctcggcc gtcgtctccc aggccggggc ccgccgagat cgggcccccg
      241 cgccgcccgc gccccccgcc gccgccgccg ccgccccggc ccgagcccat caccgccggc
      301 cgccttagcc ctccgggcca cgggtctctt cggagcgggg cgcagggtgt cggtgcctgc
      361 ggcagagcgc ccggagcagg tagtgttggt gcttcttttc agtgccagtc catccatcac
      421 gaccacattt gtcatgatga cagtgacaag atatctcccg gggcaaattc agcacctcta
      481 cctggccatc ctaacaaggt gatttgtgaa agggtgagac ttccgagcct gttccctctc
      541 ctcccaagtg atcaggacac taccattcaa gaggatgctc acttcaaagc tttcttccag
      601 agtgaagata gtccaagtcc taagagacag cgcctctctc attcagtctt tgattataca
      661 tcagcatcac cagctccctc accaccaatg cgaccatggg agatgacatc aaataggcag
      721 cccccttcag ttcgaccaaa tcagcatcac ttctcagggg aacgatgtaa cacacctgca
      781 cgcaacagga gaagtcctcc tgttaggcgt cagcgaggaa gaagggaacg tctgtctcga
      841 cataattcca ttagtcaaga tgaaaactat caccatctcc cttatgcaca acagcaagca
      901 atagaggaac ctcgagcctt ccaccctccg aatgtatctc cccgtctgtt acatccagct
      961 gctcatccac cccagcagaa tgcagtcatg gttgacatac atgaccagct ccatcaagga
     1021 acagttcctg tctcctacac tgtaaccaca gtggcgcccc atgggattcc tctctgcaca
     1081 ggccagcaca tccctgcttg cagtacacaa caggtcccag gatgctctgt tgttttcagt
     1141 ggacagcacc tccctgtctg tagtgtgcct cctccaatgc ttcaggcatg ttcagttcag
     1201 cacttgccag taccatatgc tgcgttccca cccctcattt ctagtgatcc gtttcttcta
     1261 catcctcctc atctttctcc ccatcatcct cctcacttgc caccaccagg ccagtttgtc
     1321 cctttccaaa cacagcagtc acgatcgcct ctgcagagga tagaaaatga agtggagctc
     1381 ttaggagaac atcttcaagt aggcagtttc acttatcccc cttcggccca ccccccaaca
     1441 ttacctccgt cagctccttt gcagttcctg acacatgacc ctttgcatca ggaggtgtcc
     1501 tttggagtac cttatccacc atttatgcct cggagactca caggacgtag cagataccga
     1561 tcccagcagc cagtgccccc tcctacctac catcccagct tactgccata tgtgttatca
     1621 atgcttccag tgccacctac agtcggccca accttcagct ttgaattgga tgtggaagat
     1681 ggagaagttg aaaattacga agccctgtta aacctggcag agagactggg agaggcgaaa
     1741 cctcggggac tgactaaagc ggatattgaa cagctccctt cttacaggtt caaccctagc
     1801 aaccaccagt cagagcagac tttgtgtgta gtatgcatgt gtgattttga gtcaaggcag
     1861 cttcttagag tcttaccctg taaccacgag ttccatgcca agtgtgttga taaatggctt
     1921 aagggaaatc gtacttgccc aatttgccga gctgatgctt ctgaagtgca ccgggattca
     1981 gagtgaccag cctaagagca cagatttagt ttgggtgttc ctcatcacat gtatatatgg
     2041 actatccact gaacttaacc tgtgtggctt ccagccctcc ctttaccaaa agggtcaatg
     2101 gacctttctt tgcactgtgt gacttaatca actataaaag cttacaatta gtcttcacaa
     2161 ttatgggatt gttatactaa ctgtgtgatt ggaactccaa agaccttttc tttagcttaa
     2221 ttttgtgtgt gcactaacat tccctggttt ttgtgtgatc attccgagtg ttgctgcaag
     2281 attacagtgg acgtgatctt ttagcatgtg cttttataaa aagtggtagc tccagatgac
     2341 atagcaatct accttatata gagccttcag aaactgtgag tggaactgag tgcagcggac
     2401 gactgctggt gatcagtgaa tctgtgagcg agtgtgtgca actacatgtg tgggggcatg
     2461 gtagctactg tgtgtgtgtg agatcctata taccagcatg taccaagaat gtgtgtgtag
     2521 ttttaattat gctgcaatgt ataatctggt gtgttattta aacagcacta gtactgtaca
     2581 ctggttttcc cttgtgtttg ctgttgcaca ctgattgcta agggtgcatc gattctaagc
     2641 attgaatact ccatcccctc cctccctccc aatgaatgga atgagaaaag ccttcctttg
     2701 cttcaggcag ctgttccctt ctcttccttg gtgatcctaa atgggtcact taaaaaagtg
     2761 tcagattctc gctccatgac ctgatttttt ttttcagttc ttttgtaaaa gagacttaaa
     2821 tctccaactt gctatttcca aaaagaaggt gcaatatcat attcatcatc attagcaata
     2881 ttagcatttc aatcagtgat ctgatgttac ttggttttcc tttacatttc tagtagcttc
     2941 ttacagaaag gacctgtgtt tttattaatg tgtagatttc tggtctgttc tgaagatgtt
     3001 tgagtaatat attttataaa caccactggt cctgtaagtc tctcctcctt gacttccact
     3061 ggagcaaaat ctgttttaac aactcagcct ggcttctagt ttgtgttctt cactcaggcc
     3121 cccatgggca gcggtggttt taagggaact gtttgtttct gttagtgttg attgagttca
     3181 cacactccag gcctgaggtg tctacttttt ccctcagtaa cattctcact gaaacctttg
     3241 tttcaggacg gatcagtgct gtgacagctc atttcgtagg cctggtttgc tttgacgtct
     3301 tactcttttt cttttaattt atgttagaat gagaaaagct taatacaaca ggtgcccaga
     3361 atacttgcag tgtaaatgaa gattggattt ttgtttaaaa aaataatgct gtcaaacagg
     3421 aactgacctt tatttaatct gaaatgatac atagctgtgt gtatatattt ttaaaaatag
     3481 gttcattgaa cataaatcag attgtttgag gtcatctttc agcaacattg ggttcctttc
     3541 tcctcagtgt gctcagcctt ctctgcctct gtgagttgtc agcatctgtg cggccacaca
     3601 gactgcagcc ttccactcgc agccgtgcgt gacaccttgc tgccgacctc actcagctct
     3661 catgcaggga ctgtgttcaa ccacttgtta ctgccgtggt tcttacctcc cttgaagttt
     3721 ctctaagctc gtcacagcct agagttcagg aaagttaatc cacacagaag cacaattttg
     3781 tcctcttcca gacactgttg cctctatcta gttagacaaa taggatttaa tcaacattct
     3841 gttgccccta gatttgtgtt agtgtgtcag aaatacttaa acagtggtaa aatgcacatg
     3901 ttacttttaa atcattagga taacccctgt ctggttccta atgaataaaa ggtgtgttaa
     3961 ataccaaaat tattgacata tatactaatc agctccaaat cacatacagt ttaatcttta
     4021 ttttttaatt taaagaaatc atgtttaaga tggtaaaagc ccatcttata tatagacttt
     4081 tatatatctt caaaaacttt gtacctgtac agctctaaca acactgctcc tctcagtatt
     4141 catcctgtcg atgcacaggc aaagcacttt cctaactact gcagacagac tgactaccaa
     4201 ggcacactgt gctcacgact ggaaagtggc ctttcaatgt ttgccataaa gtcccagtaa
     4261 atttttcttg ttttgtaaga ggtagttggc aatttagggg gcatctgggt ctgtcctggt
     4321 aaaaccctac catgcagatg actgcctgtc tcctgggaat gtctcggcac agagcttttg
     4381 tgacgtgcag acctcttcat ggacgggtga ggctgtctta ggttcacact tggatgtggt
     4441 tcccagctgg cctcggcgag catctctagc tagcagatga ggaagtgcag ctgtcctggg
     4501 gagatgcacc aggccacaga ggatgcggca gcctcatcct ctgtgctcta gaactctgtg
     4561 ctctagaact ctgtgctcta gaacattgtt ggcttagccc agctgtgcag tttttgtatg
     4621 atttgaattt gagttttggt gttttggttt ttggtttttt ttggtttttt ttagtttggt
     4681 ttttattttg gtttgggggt tttgtttttg tcgttgttgg ttttttggct ttgtgtgtgt
     4741 gtgtgggggt gggtgggttt ttgttttgtt ttgtttttgt tttcatgaat cacgatattt
     4801 tgtactttta aaagctccaa cctccacaaa acaactcaag gcctccaaat atcaggatgt
     4861 cctgaaaaaa tttttttagc agaatctgaa atttgatttt atacgctccc tgaaatgtaa
     4921 tttgctaaca ttattaaatt tgggcctctt gtgataatca catacaatct gcctgcctgc
     4981 ctgcctgctt ctgagtgttt tcccagcatc tccaggcctc cttaagtctg tcccccaccg
     5041 tgcatctgct tacctcatgc tgctctttgt ttcagattat gaaagctcac aggggtgttt
     5101 gttggaatca tttgctgagt catttcctca aatcatattc cattgtgtca gttaacatag
     5161 ttttaaatgt atgtattata aatatctgta accaaaatca tttgaaggct tgataaattt
     5221 ttaacaaagt ttgtacattt tttatgaaag ttactagtaa tgctttacta agtagtgcaa
     5281 tgaattttta tttttaatcc ctgtgcccaa ttttggagtt gagagggttg ttggtaataa
     5341 atgtatgatg tacacttaaa a
//
