LOCUS       XM_039089137            1898 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 34 (Rnf34),
            transcript variant X2, mRNA.
ACCESSION   XM_039089137
VERSION     XM_039089137.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1898
                     /gene="Rnf34"
                     /gene_synonym="Momo"
                     /note="ring finger protein 34; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 23 ESTs, 3 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 43 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:282845"
                     /db_xref="RGD:628636"
     CDS             37..1161
                     /gene="Rnf34"
                     /gene_synonym="Momo"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF34 isoform X2"
                     /protein_id="XP_038945065.1"
                     /db_xref="GeneID:282845"
                     /db_xref="RGD:628636"
                     /translation="MWASCCGLLNEVMGTGAVRGQQAGFPGSTGPFRFTPSSDFPTYP
                     PAATEGPNIVCKACGLSFSVFRKKHVCCDCKKDFCSLCSVSQENLRRCSTCHLLQETA
                     FQRPQLMRLKVKDLRQYLLLRNVPTDTCREKEDLVDLVLCHRGLGSGDGLDSRSLSSS
                     RSQTSSFFTQSYFSNYTPPSATVSSFQGELMDREGTFRSEVLTQVQSELASANTDDED
                     GEEDDDDDDDDDDEDDDEQEENLEEQNPGLSKKKARASLSDLSSLEEVEGMSVRQLKE
                     ILARNFVNYSGCCEKWELVEKVNRLYKENEENQKSYGERMQLQDEEDDSLCRICMDAV
                     IDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS"
ORIGIN      
        1 ccagggcctt gtgcttgcta ggcgggtgct acctctatgt gggcttcatg ctgtggactg
       61 ctgaatgaag tcatgggaac tggagctgtc agaggccagc aggcaggatt cccaggaagc
      121 actggtccat tcaggtttac accgagttct gactttccta cctacccacc agcagctaca
      181 gaaggaccca atatagtttg caaagcctgt ggactttcat tttcagtctt tagaaagaag
      241 cacgtctgct gtgactgcaa gaaggacttt tgctcccttt gttcggtctc acaagaaaac
      301 ctccgcagat gctctacatg tcacctactc caagagacag ccttccagcg ccctcagttg
      361 atgagactaa aagtgaagga cctgcggcag tatctgctcc tcagaaacgt accgaccgac
      421 acttgtcgcg agaaggagga cttagtggat ctagtgctgt gccatcgtgg actgggctcg
      481 ggggatggcc tggactcaag gagtctcagt tcctcaagat cccagacttc tagttttttt
      541 acacaatcct atttttcaaa ttatacaccc ccctctgcta ctgtgtcctc cttccaggga
      601 gagctgatgg acagagaggg caccttcagg tcagaagttc tcacacaggt acaaagtgaa
      661 ttagcttcag caaacacgga tgatgaggat ggggaggaag atgacgacga tgatgacgat
      721 gacgacgacg aggatgacga tgaacaagaa gaaaacttag aggaacagaa cccggggctc
      781 tctaagaaga aggcgagagc ttccctgtcc gacctgtcaa gccttgaaga ggtggaaggg
      841 atgagcgtgc gccagctgaa ggaaatcctg gctcggaatt ttgtcaacta ttctggctgc
      901 tgtgaaaagt gggagctggt ggagaaagtc aaccggctgt acaaggagaa tgaggaaaac
      961 caaaagtcat atggtgagcg gatgcaactt caggatgagg aagacgacag cctgtgccga
     1021 atctgcatgg atgcggtcat tgactgtgtc ctgctggagt gtgggcacat ggtcacctgc
     1081 accaagtgcg gcaagcgcat gagtgagtgt cccatctgca ggcagtatgt ggttcgagct
     1141 gtgcatgttt tcaagtcctg aaattgaggc ccctacagtg ggacactcac atgaccccaa
     1201 acatttcagt gcactaaagg gactggaaac ttactgttct aaggcagaag ctatttttta
     1261 aaattatttt catgaccaac tggggacaga aagttcatcc taagtcttag aaacctgggc
     1321 tgtgccatag gcccgtcaac cgtggacaca tggcttccca ggttctgctg agttctgtca
     1381 cttgtctccc ctgagcacta ggtgaagcca gactgttcag tgtgggtgtg gaggccactc
     1441 gcctgtctct tactttacct ttatcctgtg tttgacactt ttgttctctg aactgagctc
     1501 actgttcgtg actgggctag tgtgggctct cctgagccgt agctgctcgg aatgttcacc
     1561 taattagcca tgtatattct aaatgctaat acttaatgaa tgtacgtttc aacattattg
     1621 ctatttctgc atttaaacat aattgggaga caactgacat tctatagtcc actgcccggg
     1681 ccttagacta aacgtccatt tttgtttggg tacagctttt aatagcaagg gctgcatcta
     1741 gcttcttatc ttagaagtgt atgtgtgcta aattctttat taatatgtaa tcaatttaca
     1801 atgttttgta tagtgaaggt gtatttttag tgctacctgc tagtaatttc aactttagga
     1861 ataaaattaa attaaaaggc tgttgtagtt tccctaca
//
