LOCUS       NM_001126292            1862 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ring finger protein 227 (Rnf227), mRNA.
ACCESSION   NM_001126292 XM_001079333 XM_573122
VERSION     NM_001126292.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Nov 1, 2022 this sequence version replaced NM_001126292.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC159420.1, SRR22399484.70613.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-517               JAXUCZ010000010.1  54559862-54560378
            518-1862            JAXUCZ010000010.1  54560479-54561823
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1862
                     /gene="Rnf227"
                     /gene_synonym="RGD1563441"
                     /note="ring finger protein 227"
                     /db_xref="GeneID:497935"
                     /db_xref="RGD:1563441"
     CDS             1..573
                     /gene="Rnf227"
                     /gene_synonym="RGD1563441"
                     /codon_start=1
                     /product="RING finger protein 227"
                     /protein_id="NP_001119764.1"
                     /db_xref="GeneID:497935"
                     /db_xref="RGD:1563441"
                     /translation="MQLLMRVPSLPELGELDCNICFRPYNLGARAPRRLPGTARARCG
                     HTLCTACLRELAARGDGSRTAARVVRLRRVVTCPFCRAPSPLPRGGITEIALDPDLWS
                     RLEEEAQAECEGDPMGSPAKESGEDGEDDDGEQESEMGAGPSSAGWRALRRILDRVLA
                     PARRLRRPLPSNVLYCPEVKDIAHMTRCTL"
     exon            1..517
                     /gene="Rnf227"
                     /gene_synonym="RGD1563441"
                     /inference="alignment:Splign:2.1.0"
     exon            518..1862
                     /gene="Rnf227"
                     /gene_synonym="RGD1563441"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgcagctcc tgatgagagt gccctctctt cccgagctgg gtgagctgga ctgcaacatc
       61 tgcttccgac cctacaacct cggggcccgc gctccccgcc gcctgcctgg cacggcgcgc
      121 gcccgctgcg gccacacgtt gtgcaccgct tgcctgcgcg agctggcagc gcggggagac
      181 ggcagccgca cggccgcgcg tgtggtgcgc ctgcgccgtg ttgtcacgtg cccgttctgc
      241 cgcgcgcctt ccccgctccc gcgcggcggc atcacggaga tcgcgctaga tcctgacttg
      301 tggtcacggc tggaggaaga agcccaggct gagtgtgaag gagacccgat ggggagcccg
      361 gccaaagaaa gcggagagga tggagaggac gacgacgggg aacaggagag cgagatgggg
      421 gcgggacctt caagtgccgg ttggcgcgcg cttcgccgaa ttttggacag ggtcctggcg
      481 cccgcgcgcc gcttgcggcg tccgttgcct agcaatgtgc tctactgtcc agaggtcaag
      541 gacattgccc acatgacgcg ttgtacgctg tgaccgaacc cgggagctgt ggcagaaagc
      601 aggtgggagc agcatcttct tcaggcgtgc tctgatacaa agggttgatg tcaagactac
      661 actgatactg gaattgatac gcgcgtgacg gagatggagc tgaacagaaa gtaccctagg
      721 cagtgtgaat tgtgagcggc gaaggctcct agactgtgcc agcattacat tttcaggatg
      781 gagtggccaa gggataacag aaacaaagcc taccataatg tgggaagaga aaaaatgtgg
      841 cgtttgttca gaggctgtag tgtaagcaac agatcccatt ttagcagtag tctgtggtgg
      901 gaaatgttta ctttggggaa aagggggggg ggcaggacaa gggataagct aatttttatg
      961 ccgtgtcaat ctcacttatc tggttatgtg tgtttgctgg catgccatct tcccactctt
     1021 ggttccttgt tccagaaatt tctggttgcc tccccgctta tgattggaag tcttgcgtac
     1081 acaatctccc ttcagcctgg tagggcaggc atgaaaacat ccaagggaca tttacaggag
     1141 gccttaatta aggcctatca gggatgggtg gaccatttga taaaggaagc aaaatctagc
     1201 cctttgttat ctgtactgac tgtgtagcaa tacttggggg gggggaggat gctcacataa
     1261 tttaaatgtg tcccataatg ggacattgtt tactatatgt agttagttat atttttaaag
     1321 tcctgtaaat atcttactgt agtcttatca agaccagcag tgttggttgg tctcacagct
     1381 tgctagaaat gcagaatttc aggaccccag tccacattcc ctgatatttt ttagactctc
     1441 aggtgcatgt atgaaagtta agaaacactg gtttagatct tagtcactat gagatgtcat
     1501 catcatctgt aggtgaaaca tttaaaacac taatgacaca ttgctttaaa gttccaaagt
     1561 gacattcttt tgagaagaaa agctttgagc taaaaatgtg aatttgcagt agacctcagt
     1621 tttcagaggt cttcaagatc ttgtttttat tgacaaataa taatgtatcc agttagaagg
     1681 tataaacctc cattttaaaa ctgttttgtc cttttcctgt cctcttgagt atttctagag
     1741 tgtaaacttc aaatgactat ctccagagcc aatagcagtg ttaatgtata tgtattaaaa
     1801 aatgtttgct gaatttattt ttaatgtaat agtctcaaga ataaagcgtc tggactcact
     1861 ca
//
