LOCUS       XM_008764076            2006 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 220 (Rnf220),
            transcript variant X4, mRNA.
ACCESSION   XM_008764076
VERSION     XM_008764076.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008764076.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2006
                     /gene="Rnf220"
                     /note="ring finger protein 220; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 10 ESTs, 153 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:500532"
                     /db_xref="RGD:1598210"
     CDS             200..1126
                     /gene="Rnf220"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF220 isoform X3"
                     /protein_id="XP_008762298.1"
                     /db_xref="GeneID:500532"
                     /db_xref="RGD:1598210"
                     /translation="MPRARSGRRSREAGGREETFLRVRANRQTRLNARIGKMKRRKQD
                     EGQVCPLCSRPLAGSEQEMSRHVEHCLSKREGSCVAEDDAVDIEHENSNRFEEYEWCG
                     QKRIRATTLLEGGFRGSGFVMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCT
                     GEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCK
                     NSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVH
                     CEECWLRTLGAKKLCPQCNTITAPGDLRRIYL"
     polyA_site      2006
                     /gene="Rnf220"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ggatcacgtg atcaaggcca acatggccgc cgccgctgct gggagctgaa gtgccgccgc
       61 cgccgggcag ccggggggaa tccgccggca tcgccgccct tgccggccgg gctgctacgg
      121 ggcccagagc gccggaagct ggggctgggg cggcaccgcg cggcggcctc gggctcccgt
      181 tagagcagcc cgggcggcta tgccgagggc ccggagcggc cggcggagca gggaggccgg
      241 cgggagggag gaaaccttct tgcgagtgcg agccaaccgg caaacccgac tgaatgctcg
      301 gattgggaaa atgaaacgga ggaagcaaga tgaagggcag gtatgtcccc tgtgcagccg
      361 ccccctggca ggatcggagc aggagatgag taggcatgtg gagcattgcc tttctaagag
      421 ggaaggctcc tgcgtggctg aggatgacgc cgtggacatc gagcatgaga acagcaaccg
      481 ctttgaggag tatgagtggt gtgggcagaa gcggatacgg gccaccacgc tcctggaagg
      541 tggcttccga ggctccggct tcgttatgtg cagtggtaaa gagaatccag acagtgatgc
      601 tgacctggat gtggatggag atgacactct ggagtatggg aaaccacaat acacagaggc
      661 tgatgtcatc ccatgcacag gagaagagcc tggtgaagcc aaggagagag aggcactccg
      721 gggcgcagtc ctaaatggtg gccccccgag cacccgcatc acacctgagt tctctaaatg
      781 ggccagtgat gagatgccgt ccaccagcaa tggtgaaagc agcaagcagg aagccatgca
      841 gaagacctgc aagaacagtg acattgagaa aatcaccgaa gattcagctg taactacctt
      901 tgaggctcta aaggctcggg tcagggagct tgaacggcag ctatctcggg gtgaccgata
      961 caaatgcctc atctgcatgg actcatactc aatgccgctg acgtcgatcc agtgttggca
     1021 tgtgcactgt gaagagtgtt ggcttcggac tctgggtgcc aagaagctct gccctcagtg
     1081 caacaccatc acagcccctg gagacctgcg gaggatctac ttatgagcta gctgtccagg
     1141 caggccctgc ctcgagcaaa cccctgctcc agcctctgtg acagtgaccg cccctccccc
     1201 cttgtacata cttgcacaca ggtcccccgt gtacatacat gcatatacac acccaaacac
     1261 acatagagga ctctggagcc agagtggaac agccctgcct gcttgttcct tctgaacttg
     1321 gggaccatgc ctctttggac tctgtttcca gggttggcag gaaggtggtt tgggaagtat
     1381 agcaggacga ggctcctgag atccatcccc gagactgact gacagacacg caaacaccag
     1441 actgaagcac atgtaatata gactgtgtat gtttacaatg ttgtgtataa atgggacact
     1501 ttgccctcta ccaccttccc ctttgggtgt atgattttct tcttttataa tgactcctgg
     1561 aagcagtgcc ccttcagggc tggctggggg ctcggcccaa ccacctctta gggtgcctgc
     1621 ctcttcctct cccatggcat cccttccctt ccccatgtgc tcagtgttca gtggtgtata
     1681 tttcttctcc caaacacggg gcgtgtgccc cgaggggtct gatcctctcc ttagtcttag
     1741 ctcatggggc tcctcatgag gagctggggg tagggtggaa tgggaccaag caggaacagg
     1801 ctgcaggctg gctggctgag ggtgcctggc tgcccagcct gctgttgaga accacccctg
     1861 gggtagacac tgctcccagg ggaagtgctg gccccgcccc tgtgtgggcc ctgtggtgtg
     1921 atgctgtgtc tgtatattct atacaaaggt acttgtcctt tccctttgta aactacattt
     1981 gacatggatt aaaacagtat aaacca
//
