LOCUS       XM_008766183            4743 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 214 (Rnf214),
            transcript variant X1, mRNA.
ACCESSION   XM_008766183
VERSION     XM_008766183.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008766183.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008766183.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4743
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4743
                     /gene="Rnf214"
                     /note="ring finger protein 214; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 35 ESTs, 2 long SRA reads, 3 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 163 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363056"
                     /db_xref="RGD:1307500"
     CDS             161..2272
                     /gene="Rnf214"
                     /codon_start=1
                     /product="RING finger protein 214 isoform X1"
                     /protein_id="XP_008764405.1"
                     /db_xref="GeneID:363056"
                     /db_xref="RGD:1307500"
                     /translation="MSASEVAGLGARAPSPSESSASCTSKSDDALPDGLSPKDSAQKQ
                     KNLSPPSVSSQMITEESNRNARLEHPEQNPGPSVGDTSAAHQEVLGENLVATALCLSG
                     SGSQSDLKDLTNPAGEEGDTSLRESLHPVTRSLKAGCHSKQLASRNCSEEKCPAASIL
                     KEGSRDTGLDFRPVVPPANGVEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTADSEVNT
                     DQDIEKNLDKMMTERTLLKERYQEVLDKQRQVESQLQVQLKQLQQRREEEMKNHQEIL
                     KAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQD
                     GEINRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVR
                     SKQEWETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSEADFML
                     QVFQPSPSLTPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQSNQPSPPLPGSHG
                     RNSPGLGSLVSPHGPHMPPAASIPPPPGLGGIKASTETPRPQPVDKLEKILEKLLTRF
                     PQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVASSTQPLGRIRALY
                     PAPLAQISTPMFLPSAQVSYPGRSSHAPPTCKLCLMCQKLVQPSELHPMACTHALHKE
                     CIKFWAQTNTNDTCPFCPTLK"
ORIGIN      
        1 gtggcggccg cacaccccgc ggggacgctc ctctcgccgc cccggcctcg ccccctgcgc
       61 tcgcgccgcc ggaagtggga ggtgccgcgc gcgggccggc gctcgacccc tcccccaggc
      121 ttggtcgccc cctccccctc tccgcccgct cagagtgcag atgtcggcct ctgaggtagc
      181 tggccttggg gcccgagccc cgagtccttc ggaatcgtct gcttcttgta cttccaagtc
      241 agatgacgct ctcccagatg gcctaagccc caaagactct gcccagaaac agaagaactt
      301 gtctccgccg agtgtaagta gccaaatgat aaccgaggag agtaacagaa atgcccgttt
      361 ggaacatcca gaacagaacc ctggtccgtc agtgggtgat acctcagcag cgcaccagga
      421 agttttagga gaaaacttgg tagccacagc cctttgtctt tctggcagtg ggtctcagtc
      481 tgatttgaag gacttaacca acccagcagg agaggagggg gacacgagcc tccgggagag
      541 cctccatcca gtcactcgat ctcttaaggc agggtgccac tcaaagcagc ttgcctccag
      601 gaattgctct gaagagaaat gcccagcagc ctccatccta aaagaaggta gcagggatac
      661 aggcttggac ttccgacctg tagtacctcc cgcaaatggg gttgaaggag tcagagtgga
      721 tcaggatgat gatcaggata gctcttcctt gaagctttct cagaacattg ctgtgcagac
      781 tgactttaag acagcagatt cagaagtaaa cacagaccaa gatattgaaa agaatctgga
      841 caaaatgatg acagagagaa ctctgctgaa ggaacgttac caagaagtcc tggacaagca
      901 gagacaggtg gagagtcagc tccaagtgca attgaagcag cttcagcaaa ggagggaaga
      961 agagatgaag aatcaccagg agatactaaa ggccattcag gatgtgacca taaagcgaga
     1021 agaaaccaag aagaagatag agaaagaaaa gaaggagttc ttgcagaagg agcaggacct
     1081 gaaagctgaa attgagaagc tctgtgagaa gggcagaaga gaagtgtggg aaatggaact
     1141 ggatagactc aagaaccaag atggtgaaat caatcggaat attatggaag agacagagcg
     1201 ggcctggaag gcagagatcc tgtcactaga aagccggaag gaattgctgg tgttgaaact
     1261 ggaagaagca gaaaaagaag cagaacttca tctgacttac ctcaagtcaa ctcctccaac
     1321 actagagaca gttcgttcca agcaagagtg ggagacaaga ctgaatggag ttcggataat
     1381 gaaaaagaat gttcgggacc agtttaatag tcacatccag ctagtgagga atggagccaa
     1441 gctgagcagc cttcctcaga tccctacccc aactttgcct ccaccaccct cagaggcaga
     1501 tttcatgctt caagtatttc agcccagtcc ctctctgacc cctcggatgc ccttctctat
     1561 tgggcaggtc actatgccta tggttatgcc cagtgcggat cctcgctctt tgtcttttcc
     1621 aatcttgaac cctgcccttt cccagtccaa ccaaccttcc ccacctcttc ctggctcaca
     1681 tgggagaaat agccctggct tgggttccct ggtcagccct catggtccac acatgcctcc
     1741 tgctgcctcc atcccgcctc ccccaggctt gggcggtatt aaagcttcta ctgaaactcc
     1801 ccggccccaa ccagtggaca aactggagaa gatcctggag aagctgctga ctcggttccc
     1861 acagtgcaat aaggcccaga tgaccaacat tcttcagcaa atcaagacag cacgtaccac
     1921 catggcgggc ctgaccatgg aggaactaat ccaactggta gctgcacgac tggcagagca
     1981 tgaacgggtg gcatcaagca ctcagccact tggtcggatc cgggctttgt accctgctcc
     2041 tctggcccaa atcagtaccc caatgttctt gccttctgcc caagtttcat accctggaag
     2101 gtcttcacat gctccgccca cttgtaagct gtgtctgatg tgtcagaaac ttgtccagcc
     2161 cagtgagctg catccgatgg cctgcaccca cgcgctgcac aaggagtgta tcaaattctg
     2221 ggctcagacc aacacaaatg acacttgtcc cttttgtcca actcttaaat gatggacccg
     2281 cctggggagg aagaagagga gaaacggatg tgaacaggaa gcgcgggttc aagatttcta
     2341 aaactctata tatttataca gtgacatata ctcatgccgt gtacattttt attatatagg
     2401 taatgtgtgt atagaaagtc tgtattcaga tgttcgtaat gaaagtatgt atataatgca
     2461 gaagcacccc tccccccctc atcttgcagg cttttgtgag gatgcagact gtagggatat
     2521 atgatcttta acttggcctt gaaatcatga tccctgcatt agggctgttg tctaaacatc
     2581 taggaagctg ctgttgtgct aaggccatcc tgctttggtt tggcccagcc cctagtccat
     2641 ttttataagg ctcatgtatg cagatttgca atctggtgct cacctgctgt gcatccagac
     2701 gcctggcctt gcaggggcct ccaaagcctt ggtgttattt tagccattct actccagtag
     2761 ataaaatgat actggttgag ggggaagaaa tgtaactctg atagtttgat tcttcattga
     2821 acattttact gtgttaatgc tcattattta tacattgata tcaggtatac aggatattct
     2881 gttttacgtc agtaaaatct acagtccaag aacaacaaaa tcaggttcca tttctcccac
     2941 catcttctgt ctactttctg gatagaaaag cacaattcac agatttcccc cctgggctga
     3001 gccaccatcc ccttgttgcg actagtttag cctccactaa gcactgacca gccaggcttg
     3061 caaagtgctt aaccttccca ttcctctggt ctcctgatct agcagtcccc ttccccaaag
     3121 gttaaggcag ttggttcact accaagtggt ttggtttcac cttggatgag ctccacacag
     3181 gcactggggt gagatgtttg tgcaaaataa ctggcagaat aatcatggga tgttggactt
     3241 catttgtcaa ccaagaaagc tatggaggac acatttcctg tctaggctac agtgagacag
     3301 tgagatgaag ggaggtggta cagttatagc catgctctgt gggttcccat cggagtgaga
     3361 tggttctcca cctccgctta ttgagtactt ctggtcttca tgtccgagac agctgtggct
     3421 ctgagaacct tgattctttt ccaatcttta tctttactcc tataggaaat ggctttaatt
     3481 accttctttt tcagaattaa acaagtgtta attgagaaaa aaattgcatc tgagggaagg
     3541 gcaacattat gttaccggca attgatgttt tcccattttg ggactgggaa tgcttcttga
     3601 agctagcagt ttgtattagg atagcagctc tcctttctaa gctaactaac tctcctttgg
     3661 tttttcttca ttgcctatga gctcatggat gaattctctc ctcttgcgtt atttgcacag
     3721 gctgactgac aggcatgttt aggggactgg acttcccagg gttatcttgg catctttaag
     3781 agggaatgga acagcctgag tcctaaactt tttagaggtc aagtgacctc tgttctttgg
     3841 ttaatgaagt acttttgcct tcttgtctcc agtttggtac tacttgaaca gaaaaaggtg
     3901 gcaaaatgga aatctgcttc ctttgttctt ttcatgtagg tgattcgttt tgtcttgtaa
     3961 tcttaagatt gttctttccc ctcaactgtg cagcatccag cactagctgt atagtacctc
     4021 acagtgtccc ctgaaaactg taaattgaaa gtgagcataa agaatgtgtt tagttaaaca
     4081 tagtggcaca aacctgtaat catggcattt ggcaggtgga tgtacaagag gctagcctgg
     4141 gctacatatc tcattctcct ggccccttcc cctatggaca cacacacatt cacacacaca
     4201 tatatatggt ttctgtcgag gagtggtggc atacacctat aatcccagca ttcaggaggc
     4261 aaaggcagga aggttgctac aagttcaagg ctagcctgat ctacatgaaa tgctgcctca
     4321 aaaaaagaaa aaaaagaaaa ggaagaaaag aaagaaaaaa gaaagtaaga aaaaaaataa
     4381 cttcttttca aataaataaa taaataaaca aacaaacaaa taactttgaa gccaatagag
     4441 tagagaggaa aaaaagcagg aatgagttgg ggtcaaactg tctctcagag caaaccctag
     4501 gaaggcagca ttttggagag tgggcccttg cagttggagc cttgtcactg tggctctatc
     4561 cttgcagaga agcagtgaga aaaacactga gtctgccatg cctgtttcca tcacctctgc
     4621 ccactgggcc tcagtccatg cagaccagtg gcaaagcccc acatacaatg tggagataag
     4681 cagtcatttt ttcaggagac tttgaaaata gagctgtata atacatattt ttacaagcaa
     4741 gaa
//
