LOCUS       XM_006249991            2839 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 2 (Rnf2),
            transcript variant X2, mRNA.
ACCESSION   XM_006249991
VERSION     XM_006249991.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006249991.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2839
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2839
                     /gene="Rnf2"
                     /note="ring finger protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 40 ESTs, 5 long SRA reads, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304850"
                     /db_xref="RGD:1305491"
     CDS             82..1092
                     /gene="Rnf2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RING2 isoform X1"
                     /protein_id="XP_006250053.1"
                     /db_xref="GeneID:304850"
                     /db_xref="RGD:1305491"
                     /translation="MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRS
                     LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRP
                     DPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGK
                     KQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDP
                     VMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKG
                     ESNQMNLDTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKE
                     HK"
ORIGIN      
        1 gctttgagta ctgaaaacta ctaggttctc cgcctttcag tttggagaca gcactgttga
       61 actagacaga ccacagccta gatgtctcag gctgtgcaga caaatggaac tcaaccatta
      121 agcaagacat gggagctcag tttgtacgaa ttacaacgga cacctcagga ggcaataaca
      181 gatggcttgg aaatcgtggt ttcacctaga agtcttcaca gtgagttgat gtgcccaatt
      241 tgtttggata tgttgaagaa caccatgacc acaaaggagt gcttacatcg cttttgtgcg
      301 gattgcatta tcacggccct cagaagtggc aacaaagaat gccctacctg tcggaaaaaa
      361 ctggtttcta aaagatcact aaggccagat ccaaattttg atgcactcat cagcaagatt
      421 tatccgagcc gtgatgagta tgaagctcat caagagagag tattagctag gatcaacaag
      481 cacaacaatc agcaggccct cagccacagc attgaggagg ggctgaagat acaggccatg
      541 aacagattac agcgaggcaa aaagcagcag attgaaaatg gcagcggagc agaagataat
      601 ggtgacagtt cccattgcag taatgcgtcc acacacagca atcaggaagc cggccccagt
      661 aacaaacgga ccaagacctc agatgactct gggcttgaac tcgacaacaa caatgcagca
      721 gtggcaatcg atccagtgat ggatggtgcc agtgagattg agttggtatt caggccccac
      781 ccaactctta tggagaagga cgacagcgca cagaccagat acataaagac ttcaggcaat
      841 gccactgttg atcacttatc caagtacctg gccgtgaggt tagctttaga agagcttcga
      901 agcaaaggag agtcaaacca gatgaacctg gatacagcca gtgaaaagca gtacaccatt
      961 tacatagcta cagccagtgg ccagttcact gttttaaatg gctcgttttc tttggagttg
     1021 gtcagtgaga agtactggaa agtgaacaag cccatggagc tttactatgc acccaccaag
     1081 gagcacaagt gagccttaag caccaattcc gagactgcac tttttatagt ctattccttt
     1141 aatattaaag acgtaccatc gttactttta tggacagatc tgggatatgt tcagttttct
     1201 ttctgagcca gacttgttta cactattaga ttaatgtctc cttaatttaa agacagtact
     1261 ttttggaagg gactctagtt actcagtact ccgcactctc ttaaccgtgt acctaagtta
     1321 tatgcttata gaaaataaac gtggctcctt tagggaggac acctcgacct aggaggtttt
     1381 cacagttctg tattctttgc tttttccttc cagtttttga tctttaagac agggtctcat
     1441 tttaaagccc tggctagcct ggaccttact gagcagcaca ggctggcctt cactgtgcag
     1501 tcatactcct gcccaagtac tgggagtcta cgtggcttac agttcagttg gccatcagcc
     1561 atcttccccc tttcaaaagg ttttagctta aagaatgtta gacaatatgt attctgactt
     1621 ttttcccttg gagtcttgta tatttatagt tttctataca aactgtagta tcttcatgaa
     1681 gaccaaggct caaatttact gtgcttaaaa caattctcat aggattatta ttttcatggt
     1741 attttcttac ataatatctc atttaaaagg aagttcttta tgaacttggt gtccattgtc
     1801 atgcaatgtt ttgtttttgt catgtgtttt cactgtaagt ttagaatttc tggtcattgg
     1861 ggaagagttg aacaaagttc tttgagaaca tggttcattt acagatttca ctgaagaaag
     1921 aaaagtttaa gttggtgaaa atatatgtat tcctctgtac atttgagagt tctttttttc
     1981 tgtattttac tgttccttta tgtgtatttg atgcttttct ctattaaagt accagattat
     2041 ggagcatttt gcacgttagc cttgatgaaa agaaggtctg ttcaaagctt ccctcacttt
     2101 tcttattaat tcaagaataa catgacacag agttaaaaat ggaaaagaaa ggctttgttt
     2161 gaagagttct ttacattttg agctgccatg tgtttataaa gttagtgctc tgctgattac
     2221 actctgtaga agcagggtaa tggagtgtga acattgcgtt gacatataat gagacaattc
     2281 tgtagaagaa tgccagccag ttgggtagcc attcacgtgt ccttagtttt gtactgagaa
     2341 agtgtagata gtctgggaac cacagtcctg atgctacata tgtctccaag tttacattct
     2401 cacagtattt acaacgacac gtttgcattg gaaatttaac ccaaaggggt tttgatagaa
     2461 gggagagact tccaatacca ttgtaactaa ggtgtcagtc attttagcta tttctctgtc
     2521 catttagaca gattggggcc agcttgatgc ttttatcttg agccaactat gaaaacttaa
     2581 aggcttactc aattttttac cattttattg aaaatgtttg aaatctgttt ttacaatttt
     2641 ttgggtaatc tgtgccataa gatttgaaaa ccaccaaaaa ttatacaaac ttttatatcc
     2701 agttcctttt ctggggtaac gttaagttgt atagattact aatgcatgtt tgctgaatat
     2761 aactctttgt tttgtgatgt gattgcttag attttattgg tgacattaga ttagtagttg
     2821 tattaaataa ttaaattct
//
