LOCUS       XM_039111064            2139 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 183 (Rnf183),
            transcript variant X1, mRNA.
ACCESSION   XM_039111064
VERSION     XM_039111064.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2139
                     /gene="Rnf183"
                     /note="ring finger protein 183; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:500474"
                     /db_xref="RGD:1564412"
     CDS             933..1685
                     /gene="Rnf183"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF183"
                     /protein_id="XP_038966992.1"
                     /db_xref="GeneID:500474"
                     /db_xref="RGD:1564412"
                     /translation="MLSWKRPWGWWQGGSFPKQNRRGRAGETRTLQSGRSDSPPTIHK
                     TQGIPVRFWLPKCDQRMSEPQVQELKAECPVCWNPFNNTFHTPKVLDCCHSFCVECLA
                     HLSLVSPARRRLLCPLCRQTTVLASGQPVTDLPTDTAMLTLLRLEPHHVILEGHQLCL
                     KDQPKSRYFLRQPRVYTLDLGPEPGSQTGLPQDTAPDTRPVPIPSHYSLRECVRNPHF
                     RIFAYLMAVILSVTLLLIFSIFWTKQLFWGMG"
ORIGIN      
        1 ctttctgggg tgctgggtta tgtgtatttt gcaagagctt tggtgtgact tcattgcaag
       61 ggctcagagc agtcatgtat ctggcttcag ggatctccta ccttcccatc aaagccaggc
      121 tgagtgtgag tccagacagg tcagcccagg gtaaaaagac ttgagctcct ccctttctga
      181 aaaagacgct tgcaaggatg agtgaacttc ctcctgccag ctcagagaaa gcaagggtga
      241 ctcacaaaag caaatgtcca gtctcctgta aatgcagagg tccaaagtca tctgaggagg
      301 gaagaggaaa gccagccaga gagtggatca agagctggat gacccatgcc aacaaggctg
      361 gcccccagcg acctggaagc cagtgaggaa gccaaagcac ctgcctgaag gctgggctga
      421 ggaggagact ggccgaagct gaaacagtag gaaggggtcc tgggcttcct caacagaaga
      481 aagtggagtt cagagaagcc attgattcag atcagcaaga gtcttgtttc aaattgccta
      541 tggacgtcat gagagaaaag agaaggtgta tgcagcgagt ggaagatatg gcaggcaact
      601 cctgtgtgca aggagaagat gccagccttt tagaaaaaaa acgagggccc aagagagagg
      661 aaacccagaa gacctgccct catggtgatc taggaagagg aaactgtcac ccttcccttc
      721 ccaggctgat gatttcaggt atgaaagggg ccacctttgg acctgtgtct gctctacatt
      781 caactgctag tcacaccctt tgtgtgtgtg tgtgttcacg aatgcttctc tgtgtgtcat
      841 ttgggtctcc caggcaccac tctggccttg attccaggca agcgtgctaa ggctgcagcc
      901 aaggctacct ggcagctcca ggtgctgtga gcatgctgtc atggaaacgg ccctggggtt
      961 ggtggcaagg cggcagtttc ccaaagcaga acaggagagg gagagccggg gaaactcgga
     1021 cccttcagag tggtcgctcc gattcccctc ctacgattca caaaacccag ggcatccccg
     1081 tgaggttctg gctccctaaa tgtgatcaga ggatgagtga accacaggtc caggagctca
     1141 aagccgagtg ccctgtctgc tggaaccctt tcaacaacac gttccacacc cccaaagtgc
     1201 tagactgctg tcactccttc tgcgtggagt gcttggccca cctcagcctg gtgagcccgg
     1261 ccaggcgccg cttgctctgc ccactctgtc gtcagaccac cgtgctggct tcagggcaac
     1321 cagtcactga cttacctaca gacactgcca tgctgaccct gctccgccta gagccccacc
     1381 atgtcatcct cgagggccac cagctctgtc tcaaggacca gcccaagagc cgctacttcc
     1441 tgcgtcagcc tcgggtctac accctggacc tcggccctga gccagggagc cagactgggc
     1501 ttcctcagga cacagcccct gacaccaggc cggtgcccat ccccagtcac tactctctca
     1561 gagagtgtgt ccgaaaccct cacttccgga tctttgccta tctgatggct gtcatcctca
     1621 gcgtcaccct gcttctcatc ttctccatct tttggactaa gcagctcttt tggggcatgg
     1681 gatgagcaca ttgtgttcca ggacaaggag cagagccgtt cacagtggct gctggaccga
     1741 ggactactga actgcctttg gtgttacctt tcttgtagta ttgctcattt cacagctcgg
     1801 ggatcagcta ggtctgcgtt ggagaacaga tgcccgacag gaagagaaga gctgaagggt
     1861 cagagacctg atcttaaact aggggggtca tggagagtac agaaacagtt ctatggctac
     1921 atagccacat agtgagttgt gccaaagggc tggacagtac cacccagtca tccaactggc
     1981 tgagatagct tgtagcatct ttcactggac cggagttgaa ctgtgttgct gaaattctgg
     2041 aaagtgtttc gattctgtga gcccctgtgc ctcccctcct cccccatttc agctttttct
     2101 gatccttgcc actgttccca gtaaaggtcg tctgcattc
//
