LOCUS       NM_001191685            5147 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ring finger protein 17 (Rnf17), mRNA.
ACCESSION   NM_001191685 XM_224231
VERSION     NM_001191685.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5147)
  AUTHORS   Pan,J., Goodheart,M., Chuma,S., Nakatsuji,N., Page,D.C. and
            Wang,P.J.
  TITLE     RNF17, a component of the mammalian germ cell nuage, is essential
            for spermiogenesis
  JOURNAL   Development 132 (18), 4029-4039 (2005)
   PUBMED   16093322
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Jul 17, 2010 this sequence version replaced XM_224231.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.56835.1,
                                           SRR26360186.2805347.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-124               JAXUCZ010000015.1  34603636-34603759
            125-219             JAXUCZ010000015.1  34606808-34606902
            220-311             JAXUCZ010000015.1  34619238-34619329
            312-423             JAXUCZ010000015.1  34628623-34628734
            424-495             JAXUCZ010000015.1  34630165-34630236
            496-596             JAXUCZ010000015.1  34634040-34634140
            597-768             JAXUCZ010000015.1  34639278-34639449
            769-845             JAXUCZ010000015.1  34641772-34641848
            846-920             JAXUCZ010000015.1  34642088-34642162
            921-1225            JAXUCZ010000015.1  34647329-34647633
            1226-1315           JAXUCZ010000015.1  34648880-34648969
            1316-1474           JAXUCZ010000015.1  34680074-34680232
            1475-1664           JAXUCZ010000015.1  34682031-34682220
            1665-1833           JAXUCZ010000015.1  34683162-34683330
            1834-2024           JAXUCZ010000015.1  34685429-34685619
            2025-2166           JAXUCZ010000015.1  34687615-34687756
            2167-2320           JAXUCZ010000015.1  34691173-34691326
            2321-2436           JAXUCZ010000015.1  34694977-34695092
            2437-2554           JAXUCZ010000015.1  34696935-34697052
            2555-2672           JAXUCZ010000015.1  34699993-34700110
            2673-2900           JAXUCZ010000015.1  34703719-34703946
            2901-3051           JAXUCZ010000015.1  34704708-34704858
            3052-3170           JAXUCZ010000015.1  34705211-34705329
            3171-3261           JAXUCZ010000015.1  34707108-34707198
            3262-3377           JAXUCZ010000015.1  34708967-34709082
            3378-3664           JAXUCZ010000015.1  34712895-34713181
            3665-3828           JAXUCZ010000015.1  34720696-34720859
            3829-3948           JAXUCZ010000015.1  34724308-34724427
            3949-4029           JAXUCZ010000015.1  34725677-34725757
            4030-4155           JAXUCZ010000015.1  34727645-34727770
            4156-4212           JAXUCZ010000015.1  34730376-34730432
            4213-4329           JAXUCZ010000015.1  34733391-34733507
            4330-4498           JAXUCZ010000015.1  34735390-34735558
            4499-4634           JAXUCZ010000015.1  34737593-34737728
            4635-4824           JAXUCZ010000015.1  34738980-34739169
            4825-4924           JAXUCZ010000015.1  34740970-34741069
            4925-5147           JAXUCZ010000015.1  34741436-34741658
FEATURES             Location/Qualifiers
     source          1..5147
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..5147
                     /gene="Rnf17"
                     /note="ring finger protein 17"
                     /db_xref="GeneID:305908"
                     /db_xref="RGD:1310486"
     CDS             1..4923
                     /gene="Rnf17"
                     /codon_start=1
                     /product="RING finger protein 17"
                     /protein_id="NP_001178614.1"
                     /db_xref="GeneID:305908"
                     /db_xref="RGD:1310486"
                     /translation="MAAEASSTGLASCHLAGSKSGAPGASGCQCTRCGRKASFASGHH
                     HEYPCGHAFCELCLLAPQEYTTSKCTDCEVRTTVTMNQGHYPVDGFIKEDSSVEALPP
                     KMVNNCSSGLEKTVDQLIINLEHSSSIHRNVSSPSAVMSETEEIDEALKIAGCNSEQL
                     SNAIKMLDSTQDQTRQETGSLREVVEKQFDTLIASLDSRKKSLCEELVRRTDDYLSKL
                     VTVKSYIEEKKSDLDAAMKIAKELKSAPSLRTYCDLTQIIRTLKLNFESELSQVSSII
                     PRNPPRLNINCSEVICMFNSMGKIEFEDSTKCHPQENEVGQNVQKKFNSKKELCCDVY
                     SSLEKKRVDTVVLADEAPVPPLQAETPDRHLEGENKQPQKEVLVVASPKTVAVLPQLG
                     SSPDVIIEEIIEENLESCFTDEPIETPRYPKKPPQKELSAPVASKAGCPELVFVSHVT
                     HPCHFYVRKYSQIKDAAMLEKKMKQVCSKSLHLDPSDTLELGARIFVNSIKNRMWCRG
                     IITEIIPTKTKNVRKPCSPTKFSVCEISLIQIFMVDFGNSEVLIITGVGDTHVGPEHV
                     GEQHITLSDFCLLVRKSEPYSEELLKDIPHLAHLCSLKDIVPYNSSEGWEKEAKVEFL
                     KMVNKKAVLMKVFGEEDDILIVDLQKPPTNKISSDMPVSLRDALVFMELARFRSQSLR
                     SHGENNTALCYRPPALPEEMTEVSVMVCHINSPTDFYLQLMENLDFLSLLKTIEEFYK
                     GEDGENLEILCPLQNQACVAKFEDGIWYRAKVIGLPGHREVEVKYVDFGNTAKITLKD
                     MRKIKDEFLEPPEKAIKCKLAFIEPSKRSHWSKKAKEKFEEKTQDKFVTCSVIKILEN
                     GVLLVELFDSRAPGTSAVSINEQLVKEGLASYEAGYTLKDNSKKHLEVWDPSPEEIIS
                     SEINSLSPLSVNSLANESFQSLYNKELPVSICNVLSPEKIYVQWLLTENLLTSLEEKM
                     VAAYEHSEWKPVKWECDMHCAVKIPAKSQWRRGQIIRMVTDTLVEVLLYDVGIELVVN
                     IHCLRELQENLKTMGRLSLECSLVDIRPTGGSDKWTATACDCLSLYLTGAIATIILQE
                     NSTTWPLPVKIFCRDEKGERVDVSKYLIKKGLALRDRRVSKSSNSHSPEKSLEIPLEQ
                     GDSVVTKCFQINFDTNKKIADKVNEHKVPESKEKYSESRTNGFYKPPAVPNTSSFEAI
                     VSCIGDDGTIFVVPKLSEFELIKMMDEIQSNLKCLGLLEPYFWKKGEPCAVRGSDTLW
                     YRGKVMEVVGGTIRVQYLDHGFTEKIPQCHLYPILLYPDTPQFCIPCQLYQTLPVGNV
                     WQPDAIELLQELLSKREVDIHIMELPDHPWGKLSVHLYFDGMSLSYFMAYHKYCIFEH
                     TEEIFKEKPRGQNKKYEDENWKIRFEDLLLPEMEAPILPPYLSSLLPPPEELYAVQVK
                     HIVSPDEVYICLDSVESCTQLNNHGDTDDSGVSWEPESESLEEALQRLNKNVETFPPL
                     TDFSSEMPCLAEYADGLWYRAKIVSIKEFNPLSVLVLFVDYGSTEKLTINRLRQIPIQ
                     LMQYPAQAIKVLLAGFKPPLSDSGKTRIPYCPRWSMEALWTMIDCLQGKQLYASSVAQ
                     APEQIVTLYEDEQYPVHMSLVEMGLADKDE"
     exon            1..124
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            125..219
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            220..311
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            312..423
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            424..495
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            496..596
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            597..768
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            769..845
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            846..920
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1225
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            1226..1315
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..1474
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            1475..1664
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            1665..1833
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            1834..2024
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            2025..2166
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            2167..2320
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            2321..2436
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            2437..2554
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            2555..2672
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            2673..2900
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            2901..3051
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            3052..3170
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            3171..3261
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            3262..3377
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            3378..3664
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            3665..3828
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            3829..3948
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            3949..4029
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            4030..4155
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            4156..4212
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            4213..4329
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            4330..4498
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            4499..4634
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            4635..4824
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            4825..4924
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
     exon            4925..5147
                     /gene="Rnf17"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcggcag aggcttcgtc gactgggttg gcttcctgtc acctagctgg gagtaagagt
       61 ggagcgccgg gtgcttcagg gtgccagtgc actcggtgtg gaaggaaggc gtcctttgcc
      121 tctggtcacc accacgagta tccatgtggt catgcctttt gtgaactgtg cctgttagca
      181 cctcaagaat acaccacgag taaatgcact gactgtgagg ttcgtacaac tgtcactatg
      241 aatcaaggtc actacccagt agatggattt attaaagaag attcttctgt ggaagcattg
      301 ccacctaaaa tggtaaataa ctgctcttca ggtcttgaaa agacagtgga ccagcttatt
      361 atcaatttag aacattcatc ctccatacac aggaatgttt caagcccatc agctgtaatg
      421 tcggagacag aagaaattga tgaagcactg aagatagcag gctgcaattc tgaacaatta
      481 agtaatgcta taaaaatgct tgatagcaca caagatcaaa caagacaaga gacgggcagt
      541 ctaagagagg ttgtggagaa acaattcgat acacttattg cttctcttga ttccaggaaa
      601 aagagcctgt gtgaagaact tgtaagacgt acagatgatt atttatcaaa attagtaaca
      661 gttaaaagct acattgaaga gaagaaaagt gacttggatg cagccatgaa gatagcaaaa
      721 gaactcaaat cagctccttc tctgaggacc tactgtgacc tgactcagat tatccggacc
      781 ttgaagttaa actttgaaag tgaactatca caagttagtt ccataattcc aaggaaccct
      841 cccaggttga atataaattg cagtgaggtt atctgcatgt tcaacagtat gggaaagatt
      901 gaatttgagg actcaacgaa atgtcaccct caagaaaatg aagttggaca gaatgttcaa
      961 aagaaattta atagtaaaaa ggaactgtgt tgtgatgtat actcctcact agagaagaaa
     1021 agggtagaca cggtcgtcct ggctgatgaa gcccctgtac ctcctttgca agcagagacc
     1081 cctgacaggc atttggaagg ggaaaacaag cagccacaga aagaggtgct cgtggtggct
     1141 tctcctaaga ctgttgctgt actgcctcaa ctgggatcca gccctgatgt gataattgaa
     1201 gaaattattg aggaaaacct agaatcatgc ttcacagatg aacctataga gactcctaga
     1261 tacccaaaaa agcctcctca gaaagagctg tctgctcctg ttgcatcaaa agcaggttgt
     1321 ccagagctag tttttgtaag tcatgtcaca catccttgcc acttctatgt gcgaaaatat
     1381 tcacaaataa aagatgcagc catgttggag aagaagatga agcaggtgtg cagtaagagc
     1441 ttgcacctcg atccctccga cactctggag ctgggtgcaa gaatatttgt caacagtatt
     1501 aagaatagaa tgtggtgtcg aggaattatc actgaaataa ttccaacaaa aaccaaaaat
     1561 gttagaaaac catgtagtcc aaccaaattc tcagtctgtg aaatttcact aatacagata
     1621 ttcatggtag attttggaaa ttctgaagtc ctgatcatca cgggagttgg tgacacacat
     1681 gtgggaccag agcatgttgg tgagcagcat attacactaa gtgacttctg tctgcttgta
     1741 aggaagtcgg aaccatatag tgaagaactg ttgaaagaca tcccacattt agcacacctg
     1801 tgctccttga aagacatcgt tccatacaat tcaagtgagg gctgggaaaa ggaggcaaaa
     1861 gtggaatttt tgaaaatggt aaataagaag gctgtgttaa tgaaagtttt tggagaagaa
     1921 gatgatatcc ttattgtaga tctgcagaaa ccgccaacaa ataaaatcag cagtgatatg
     1981 cctgtgtctc tcagagatgc attggttttt atggaactag caaggtttag gtcacaatca
     2041 ctgagaagtc acggtgaaaa caatacagct ttatgctatc gcccacccgc tttgcctgaa
     2101 gagatgacag aagtttcagt catggtttgc catatcaaca gccctactga cttctatctt
     2161 cagttgatgg agaacctgga ctttttatct cttttaaaaa caattgagga attctataaa
     2221 ggtgaagatg gagaaaatct ggaaatcctt tgtcctcttc agaatcaagc ctgtgtagct
     2281 aaatttgaag atggaatttg gtatcgtgca aaagtgatcg gattgcctgg acatcgagaa
     2341 gtagaagtta aatatgtgga ctttggtaat actgcaaaaa taacacttaa agatatgcgg
     2401 aaaataaagg atgagttttt ggaacctcca gagaaggcaa ttaaatgtaa actggcattt
     2461 attgaaccaa gtaaaagatc acactggtcc aaaaaggcta aagaaaaatt tgaagaaaag
     2521 actcaagata aatttgtgac atgttctgtt attaagatcc tggaaaacgg tgtgctcttg
     2581 gttgagcttt tcgattcccg agctcctgga acaagcgctg ttagcattaa tgagcagctt
     2641 gtgaaagaag gcctagcatc ttatgaagca ggatataccc tgaaagataa ttctaaaaag
     2701 catcttgaag tatgggaccc ttctcctgaa gaaatcattt caagtgaaat aaacagctta
     2761 agtcctctct ctgttaactc tctggctaac gagagtttcc agtcgttgta caacaaggag
     2821 ctgcctgtga gcatatgtaa tgtgctatcc ccggagaaga tttacgtcca gtggttgtta
     2881 acagagaacc tactgacgag tttagaggag aagatggtag ctgcttacga gcactccgaa
     2941 tggaagcctg tgaagtggga gtgtgatatg cactgcgctg ttaagatccc ggctaaaagt
     3001 cagtggcgaa gaggccagat catcaggatg gttacagaca cactggtaga ggtcttgctg
     3061 tatgatgtcg gtattgaact agtagtgaat attcactgct taagagaact tcaagaaaat
     3121 ctaaagacaa tgggaagatt atctctggaa tgttcacttg ttgatataag gccaactggg
     3181 ggaagtgaca agtggacagc aacagcttgt gactgtcttt cattatacct cactggagct
     3241 atagcaacca taatcttaca ggaaaacagc acaacgtggc cattgcctgt gaaaattttc
     3301 tgcagagatg aaaaaggaga acgtgttgat gtttctaaat atttgattaa aaaaggtttg
     3361 gctttgagag atagaagagt gagtaaatca agtaacagcc attcgcctga gaagtctctg
     3421 gaaatacccc tggagcaagg agattcagta gttactaagt gctttcaaat taactttgat
     3481 actaacaaga aaattgctga taaagtcaat gaacacaaag tacccgaatc taaggaaaaa
     3541 tattcagaaa gcagaaccaa cggattctat aaaccaccag ctgttcctaa cacgagttca
     3601 tttgaggcaa tagtgagctg cattggtgat gatggaacta tatttgtagt gcctaaatta
     3661 tcagagtttg agctcataaa aatgatggat gaaattcaaa gtaatttaaa gtgccttggc
     3721 cttttggagc catatttctg gaaaaaggga gaaccctgtg cagtgagagg atctgatact
     3781 ttgtggtacc gcggcaaagt catggaggtt gtgggaggca ccatccgggt acagtactta
     3841 gaccacgggt tcacggagaa gatcccacag tgccatctct atcccattct gctgtatccc
     3901 gacacacccc agttttgtat tccctgtcag ctctatcaga ctttaccggt tgggaatgtc
     3961 tggcagccag atgccataga gctgcttcag gagctgcttt ccaagagaga ggtggacatt
     4021 cacattatgg aattacctga ccatccatgg gggaagttgt ctgtccatct ctattttgat
     4081 gggatgtcac tttcttattt tatggcctat cataaatact gtatttttga acatactgag
     4141 gagatattta aagaaaaacc aagaggtcag aataaaaagt acgaagatga aaactggaaa
     4201 ataagatttg aggacttgct tttgcctgaa atggaggctc ccattttacc accatatctg
     4261 tcttcacttc tgcctccacc agaggagctt tatgcggtgc aagtgaagca tatcgtctca
     4321 cctgatgaag tgtatatttg cctggactct gtagaaagct gtactcagct taacaatcat
     4381 ggtgacacgg atgacagtgg agtcagctgg gagccggagt ctgagagcct ggaggaagca
     4441 ctgcagagat tgaacaagaa tgtggagacc tttcctcccc tcacggattt tagctcagag
     4501 atgccttgcc ttgcagaata tgctgatggt ttatggtata gagcaaaaat tgtttccatt
     4561 aaggaattta accctctatc tgtcctggta ttgtttgttg attatgggtc cacagagaag
     4621 ttgacaataa acagattacg tcagattcct attcagctta tgcagtaccc agcccaagcc
     4681 ataaaggtgc tcttggcagg gtttaaacct cccttgagtg actcaggaaa aacaagaata
     4741 ccctactgtc ccaggtggag catggaggcg ttgtggacta tgatagactg tctccaaggg
     4801 aaacaacttt atgcttcctc tgtggctcag gcaccagaac agatagtgac attatatgaa
     4861 gatgaacaat acccagttca catgtccttg gtagaaatgg ggcttgcaga taaagatgaa
     4921 tgatgtgtac aagagctcct gcagctgtcc agaaaaagtt ttgttagatt tgtaccattt
     4981 caggtttgat tttatcttgt tctgcagtgc tgtctttttt ttcctccttt agtcttactt
     5041 ggtaaattgt taaggaattg tgtgaaaagt taatgttttc tttgaaacat ttttgttttg
     5101 tttttatttt tattgtaatt tcaaaataaa aattagccat atagaaa
//
