LOCUS       XM_001061888            7338 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 169 (Rnf169),
            transcript variant X1, mRNA.
ACCESSION   XM_001061888
VERSION     XM_001061888.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001061888.8.
            
            On Jan 21, 2021 this sequence version replaced XM_001061888.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7338
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7338
                     /gene="Rnf169"
                     /note="ring finger protein 169; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, 3 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 172 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:685009"
                     /db_xref="RGD:1583288"
     CDS             243..2327
                     /gene="Rnf169"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF169 isoform X1"
                     /protein_id="XP_001061888.3"
                     /db_xref="GeneID:685009"
                     /db_xref="RGD:1583288"
                     /translation="MAAAGPSTRASSAAGAAALSRRGRRGRCDEMAAAKAGAPGPASS
                     PALLVLRPAPRPEESGCTGCLETPGEVAALPCSHSRCRGCASRAAGPGCRRCGPRGSG
                     WARRRARDDGQAAADLMGERARRGQPERCRPRRDGGAAASGPRPEPEPLAEPEFIFRT
                     PIKLSKSGELGEEYGCLRKLRGEKLQEEKTCEDQVHKILQEDSEVGKRKADEQKKREE
                     PAVLKTGLEQCPARLSDSENEEPSRGQMMQTHRSAFVSKNSSYSLAFLAGKLNTKVQR
                     SQSCSDTIQDRVRSRLRTAPPSRAKITTITPGSTPIIGVLLSTQNSRCLSAPDLTIEK
                     RLPFSSLSSLASLHKPERSISPESNDSISEELNHFKPIVCSPCTPPKRLPDGRVLSPL
                     IIKSTPRNLSRSLQKQTSYEASPRILKKWEQIFQERQIKKTLSKATLTSLAPEAGEEL
                     PGSEAIHSSKERPSLALSTRLSRVQVLSECAGPTSTALEYFPSVNQTKVEQDCVRKRS
                     HEAPLETCHSSEHRGVASGPSLEGEQFEESRSTVDATLVKTCISTVMKTTTVNSLLPK
                     NDVLDGVLKTKKQLRTLSHFDLGNGILVNSLGEEPTPSLRRGRKRRCKTKHLEQNGVK
                     KLRPPSSDMGLAPKDPGLLEVGQKLQQEEEGQQLALQSQRMFDSERRTMSRRKGSVDQ
                     YLLRSSSLAGAK"
ORIGIN      
        1 ctggattcag tgctagaaac tgcgaagact ggagggcggg ctgaagaccg gatatataaa
       61 gaatagtcat taaatattaa tgagcagtct cctcctgcta agctagaggt tctaggagaa
      121 atatccccag gcctactagt tcccgccccc tcatgaatat gcagatagct gtccgccgcg
      181 cactgccccg ccctctactc ctctcctagc gcaacggact ctcccttcaa acgggaaaca
      241 agatggcggc ggcaggtccg agcactcggg cttcttccgc ggcgggcgcg gcagctctga
      301 gtcggcgggg ccggcggggc cgctgtgacg agatggcggc agcgaaagcc ggggctccgg
      361 gcccggcctc tagccccgcg ttgttagtgt tgcggccagc gccacggccg gaggagtcgg
      421 gctgcaccgg gtgtctggag accccggggg aagtggcggc cctgccgtgc agccactcgc
      481 ggtgccgagg ctgcgcctct cgcgcggccg gcccgggctg ccgtcgctgc ggtccccgcg
      541 gctcgggctg ggcccgccgt cgggcccgcg acgacggcca ggccgccgcg gatctgatgg
      601 gcgagcgcgc ccgtcgcgga cagccggagc gctgccgccc gcgccgggac gggggcgcgg
      661 ctgcctcggg gcccaggccg gagccggagc cgctcgcgga gccagagttt atattccgaa
      721 caccaatcaa gttaagcaag tcaggagaac ttggtgagga atatggatgc ctgagaaagc
      781 tgagaggaga gaagttacaa gaagaaaaaa cttgtgaaga tcaggtgcac aagatactgc
      841 aggaggattc cgaagtgggg aagaggaaag ctgatgaaca gaaaaagaga gaggagccag
      901 cggtgctgaa aaccggtctg gagcagtgtc ctgcacgtct ctcggattca gagaatgaag
      961 aaccttctcg gggccagatg atgcagaccc atcgctcagc ctttgtttcc aagaacagct
     1021 cttattcctt agctttcctg gcagggaagc taaacaccaa ggtgcagaga agtcagagct
     1081 gcagtgacac aattcaggac agagtgagga gcaggctcag gacagctcca cccagcagag
     1141 ccaagatcac aactataact ccaggctcca cccccatcat tggtgttctc ttgtctactc
     1201 agaacagccg ctgcctctca gcccctgact taaccataga aaagcgcttg cccttcagct
     1261 ccctttcatc cttggcttcc ttgcataagc cagagcgctc tatcagccct gaaagcaatg
     1321 acagcatctc tgaagagcta aaccacttca agcccatcgt ctgctcacca tgcactcctc
     1381 ccaagagact ccccgatggc cgggtgctca gccctctcat catcaagtct acgcctcgca
     1441 acctgagcag aagcctgcag aagcagactt cctatgaggc cagtcctcgc atcctcaaga
     1501 agtgggagca gatcttccag gagcggcaga tcaagaagac actttcaaaa gccactctca
     1561 cctccctggc ccctgaggca ggggaagagt tacccggttc tgaagcaatc cattccagca
     1621 aggagaggcc gtctctggct ttaagcacaa ggctgtcaag ggtccaggtg ctctcagagt
     1681 gtgctgggcc cacctccact gccctggagt acttcccttc tgttaaccag acaaaagtag
     1741 aacaggactg tgttagaaaa aggagccatg aggccccact ggaaacctgc cattcctcag
     1801 agcacagagg agtagccagt gggccttctt tggaagggga gcagtttgag gagtcaaggt
     1861 ccactgtgga tgccacatta gtcaaaactt gcataagcac agtcatgaag accacaacag
     1921 ttaattcact gctacctaaa aatgatgttt tggatggggt cctcaaaaca aagaagcaac
     1981 tgaggacact cagccatttt gatctgggta atggcattct ggtcaacagc ctaggagagg
     2041 agccaacccc ttccctgcgt agaggccgga aaaggcgctg taagaccaag cacttggaac
     2101 aaaacggggt taaaaaactg cggccaccca gcagtgacat gggcctggcc cccaaagacc
     2161 cagggctgct tgaggtgggg cagaaattgc agcaggagga agagggccag cagctggctc
     2221 tgcagtcaca gcgcatgttt gacagtgaga ggcggactat gagccggcga aaaggcagcg
     2281 tggatcaata tctcttgagg tccagcagct tggctggggc caagtagcac ttaatgtaca
     2341 aagtaatgtt accagctttt cagaggtcct tggccacagt catttatcca aaagagctag
     2401 ctgaatgttc tcactttgaa tttctttcaa tggcaaaata ctgtcttcta ttattctgag
     2461 aggatgcagg gccttggtat tcaaaagcca agtgtctgca tctttggctt tctaggacca
     2521 gggccagtcc tcctcaccct ctgagtgagc cgactcgaag gcttctgggc ccatatgggc
     2581 tgtacccact tggagtgagc ttgggaatgg ccagtgttag agatggtagg gagatgggat
     2641 aatttctcat gctcagagcc cctggcttct taccacagag gggtgtttta aggtagcctt
     2701 gcagataagc atggcttctt ctcagagaca agcagtgcct gtctctgaaa gagaagagcc
     2761 aaggtaaata gatactcaca ctcatctttc tctccccttt gccacaagta atttctacac
     2821 ccaagtcagt tgagcttaga acttttgcct ctacagaaat taatttgtaa tctctgttta
     2881 aactatgaca tttgattgaa gcagtgtggt tgacacctgg tcttcctgag acctagtttg
     2941 taagtgcagt cagctggatg aagtctcagt gtagatgtcc aggttctctt agctgccaag
     3001 tggcctagcc cagactgacc atcggctctc atggccacaa gtcccaatgt ttctccacaa
     3061 tcacagggtg cccaaaggaa atacaaccta agggcatgcc agggccaccc agactggctg
     3121 ggcaccgagt gtgacagtgc aaagcccacc tagaagcact tggccttgat gggatgtaaa
     3181 acagaactgc agtgatctca cctagcccgt ttacaggccc ctgtcctagg agtgcccggg
     3241 acgaactgtg aggtttcctt actactttcc acgtggcaat ggctatctgc aatctaaaaa
     3301 tcatgaaaaa acttgcccta aagtcaggca aaggacaaag ctgaaactcc atacagtgga
     3361 aacgagctat ctggctggat gcagctggta aattgagtcc catggacctt tggggttaat
     3421 tttcttagca gctgacacca tgtgtctttt gcatccctgg tggtgcttgg tgcttctgcc
     3481 cttctgggct cattgagaat atggattatg atatggtttt agggactcag gtgggctggc
     3541 ctttcctgtg tttgtatgag ctgttaccat agtcatgtgg ctgacatttt aacagacctt
     3601 ccagagcttt tataccaatc ctgtgtcccc cttaaaaggt cccagaaaga taatgcagag
     3661 ttgtctggtg acgttacctt tgatcagaat gtttctgaag cattcgaagt ctagagggag
     3721 ctggggctta gacttgctgt tctgtgccaa gggagatgtc agtccctggg aattctagaa
     3781 gagagagctt cagatttgga gttaaccaga aactggttga agcttctgaa ggtgggaaga
     3841 agggtgtgga gtcccaagca tggtatcctt gaagcagaca gcaaatttct ctgccactca
     3901 tagttgactg tgcccaggga tgctagatgt gtgtggccat tagcaaggta gcttcagagg
     3961 ctgctgtggc agggaacctg tgcgagcctg aagttgggta catgtcttca aaacatgcaa
     4021 cagtcccatg actttatact tgtactactt tacttcccat cctaggcagc gtaaggcttt
     4081 aagggctgct ggaaggcatg ccagtgccct aggtaggaga gctggccctg gctgcagaca
     4141 ccagggaatt ccagtaggga aaacttagta atgtctacca tttcatgtat ttcccttatg
     4201 atcttagtaa ttattattgg aaggttagtc ttactgggta gtattaaaga cacttatttt
     4261 tccacttgcc acccttttta tatgtcacta atgcttagaa aaacactttc agttggaatt
     4321 aattttgggt tttggtaaga agataaaata ttttaataga tgaaagatat atattttaaa
     4381 tatccccctt cccctagcaa ctaccttgaa taagagtgca tagcagtggt gacaagtgtg
     4441 ggctcaggtg cagtgttgct gctgagtgac agacactggg ctgtccctgt gtcccccggg
     4501 gagacctcga gtgttgtaga cagtgttctt tcccatactt cctgctgagc agtggccctg
     4561 aaatagaggc aaagcagttt atgttgagaa ggaatggctt actctttaat ttgcttaccc
     4621 ttgaaaatgg aaaaaattac tgatgtatct gcatgcaaga tgctctcaaa cttaatgaaa
     4681 cctgaacact tcatttctga caatttccgt cttggtgttt gactgaagcc cattgcagct
     4741 acagttgttg agtaaataga caagagaaat agagtgttgg ggagggttgg ggagctaggg
     4801 tggaagacac catttcacaa atagttctcc taagtcactg cagtcctagc cactgcacat
     4861 cgcccacatt ctgctgtgct ccttggtgtg tgtgcattct gtttatcttt tcttattaaa
     4921 gaggaaacca tgagggacag gagggtgagc ctttctgatg ggaaatgtaa gagaagtgct
     4981 atccctccaa agggcttagt agcccttctc cagagaaggt aaccctggtt atatttaaga
     5041 gcagctgctc atatctgttt gaagaagtca tctgaagtca tctgggcctt gtgggctgat
     5101 atcaagtcag ggagcactct gccagcacct ggcctctgac cttagttgcc tctttaaaaa
     5161 aaagtctggc tgaggattgt ctcggaatct ttcttaattg acttcattta tttaaaaaaa
     5221 atcattcttt gattatggaa gaagtactgg tcataaatga tctctctctc tctctctctc
     5281 tctctctctc tctcagaaat taaagctatt tgatagttat tgtctgatta caaactagcc
     5341 actgactaaa atgggaggct aatgagggag gctgtgctca ttcagaagcc acttttgagc
     5401 tcttagacct cccaccctgt gctggaccat aggctagccc ctcatgctga gggccttgtg
     5461 cagggcaatg tgtgagaatg tgtttgaccc aagaatgcat tcatgaactt taaatggctg
     5521 ttccatctct ggcaatgctc ttcagtggtc ctgctcagga gatctggctt agcagatcac
     5581 ccacattttc cataccttat cagtatttct gagtttgatt aactctgctt ttttcatttc
     5641 ctaagtaatt ttgccaagga agaatggatt tccctgcagt ggttacagaa cagtagcccc
     5701 tgtttagagg ttgcatttag ctcaaatccc aagaaatgag gcaggtctgg attgccctga
     5761 agaacatctt tcacttgagt gacctcctaa tgtatcccaa cctgactcct caccagaccc
     5821 agcagtgact tggggtttct ttctagctta taactgaagc agagagccag taggaaaggg
     5881 tagctagttc atcatcatga ggttaaatct agaccagctc cagccacttc ccactgtagt
     5941 gctctagagc ccaaataact gtaaaagtta cacggtttgt aaaagggaca tccagatgac
     6001 tgtttttttc ttctgttttc ttcagttaag atatacctat atcccctgaa tacacccaca
     6061 atatatataa tggggaaaac cattaagtac caaaccaaaa tcagtgtgat ttaaataatt
     6121 ggtgggattt tggttggaat agctgtcatt ttaattacag cctttgctgt ttctttgaaa
     6181 atcaaactcc atagggtcct aaacctttcc tagtgagctc tttgctcacc agccttataa
     6241 tactccttac attgagcctt taggaggaat ggagctggtt taagttctga taactcagta
     6301 ggatttgagg atgaggctgc tgcacttttt ttttttgaaa gatgacccag aaatgcaaat
     6361 ttcccagttt tgttatccac tgtagctttc tgaggattgt tctgtatgag agacttggag
     6421 atacagaggt caccaggttc tagtcaaact ggatggagga aaaagtgcca tgccccaccc
     6481 ccacaccccc tgtgagcaga cagctgtggg cattggcagc atttctcctg gggaagtgca
     6541 actgtgttgc caggagtatg ggaacttaag tgatatggga gctgacccta gactcttgag
     6601 ttagacaagg ccgtgctgag gccagacttg cccatgctct tcactgctgc tgtggatgag
     6661 gcacagacag ttcagccttc agctgtcaag ctgggccagg agcagtttcc acatggttcc
     6721 aggtccccgc agcagcagca gcagcagcag cagcagcaac agcaacagca gccaggctct
     6781 ccctagctgc tgcttgccct ccaggctgag ccacagttca gtccagcaga ttccagtttg
     6841 ctcaggcata accaccagca aagcaagcaa gcagactatg caagacagga agtaactagc
     6901 tgaaatgcca acgaatgttt cttttttcac ctgatacact gtttactctt aactgtacaa
     6961 atatagtttg tcctaagagc caagagagga acctttccac ctacaaatag aaaatggttg
     7021 tctgttggct ttaggctacc tgttacagct cctcatagcc tggtgttgta tttattcaac
     7081 ctgtttacat tagaattgga gaaggggccc tggatcttgg tgggctgcca ctgtaccccc
     7141 aagagccttt tgatagaggg acttgggaca cgttatggcc tgtcagggat gcttttacca
     7201 caaagaaatg gtatggaatc aagtgggatg attgatgtat gattgacaca gtaccaaagt
     7261 gcactcttca atgtatatgt gcctgtttca ggcaaggtcc gagttgaaaa tgcagtaaag
     7321 cagagtcatg aaagcaaa
//
