LOCUS       XM_039088630            2861 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 168 (Rnf168),
            transcript variant X1, mRNA.
ACCESSION   XM_039088630
VERSION     XM_039088630.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088630.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2861
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2861
                     /gene="Rnf168"
                     /note="ring finger protein 168; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 22
                     ESTs, 2 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 107
                     samples with support for all annotated introns"
                     /db_xref="GeneID:690043"
                     /db_xref="RGD:1585168"
     CDS             316..1266
                     /gene="Rnf168"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF168 isoform X1"
                     /protein_id="XP_038944558.1"
                     /db_xref="GeneID:690043"
                     /db_xref="RGD:1585168"
                     /translation="MCKSKETDSSDTKSPVLQDTDVEESMPTHSPQTCPETQGQGPEP
                     LTEMPVPWLCARNAEQCLEGKAEAVSTNPDDSCIVNDGGPRAIVSNSKEAAVKPPTKI
                     ENEEYSVSGVTQLTGGNGVPTESRVYDLLVGKEISERENQESVFEEVMDPCFSAKRRK
                     IFITSSLDQEETEVNFTQKLIDLEHMLFERHKQEEQDRLLALQLQKEADKEKMVPNRQ
                     KGSPDQYQLRTSSPPDGLLNGQRKNVKDRNSPKQTADRSKSQRSRKGEYWETFESTWK
                     GSVNGTKMPTPRKDSCNVSKRACPLQHRSAQKSILQMFQR"
ORIGIN      
        1 gtgaggagta catacagaga ctgctggccg aggaggagga ggaggagaaa aggcggacgg
       61 agagaagacg aagtgagatg gaggagcagc tgaggggcga tgaggagctg gcgaggaggc
      121 tgagcaccag catctaacta cgagagaaat atcttggcat ctcctttgag ttccagaaaa
      181 tcagatcccg tcacaaacaa gtcacagaag aaaaatacga acaaacaaaa aaactttgga
      241 gatattcaaa gatacttgtc acctaagtca aagcctggga cagcatgggc atgtaaaact
      301 gagcatggag aagacatgtg caagtctaag gaaacagaca gtagtgacac gaagagccct
      361 gtgttgcaag acacagacgt tgaagaaagc atgccaacac attctcctca gacctgccca
      421 gaaactcaag ggcaaggtcc ggagcctttg acagagatgc ctgtgccatg gctatgtgca
      481 aggaatgctg aacagtgcct tgagggaaaa gctgaagcag tgtcaaccaa tcctgatgat
      541 tcatgtattg taaatgatgg tggacctaga gccatagttt ctaactctaa ggaagctgca
      601 gttaagcctc ctaccaagat agaaaacgaa gagtattctg tgtcaggtgt gacccagtta
      661 actgggggca acggagttcc aacagagagc agagtgtacg acttactagt cggaaaagag
      721 atttccgaaa gagaaaacca ggaatctgtg tttgaagaag tcatggatcc atgcttttct
      781 gcaaaaagaa ggaaaatatt catcacatcc tccttagatc aagaagaaac agaagtgaat
      841 tttacacaaa aactgataga tttggaacat atgcttttcg agagacataa gcaagaagaa
      901 caggacaggt tgttagcatt acaacttcaa aaagaggcag ataaagaaaa aatggtgcca
      961 aaccggcaga aaggatcccc agatcagtac cagctgcgca catcttcacc cccagacggg
     1021 ttgctgaatg gacagaggaa gaatgtcaaa gataggaact ccccaaagca aactgcagat
     1081 cgttcaaaat ctcagaggag caggaaaggt gaatactggg agaccttcga aagcacttgg
     1141 aagggttcag ttaatggaac gaagatgcca actcctagga aagatagttg taatgtatct
     1201 aaacgtgcct gtcccctaca gcacagaagt gcacagaaaa gcattcttca aatgtttcag
     1261 aggtaaccaa gcaaagcacc gggagagagt tctatagtcc agtaaagcta tattatagca
     1321 aagctagctc ttctccccta aaatcctgag atgtgtcatt agtttctgct cagcaaacac
     1381 acttcttctc tttaagctgt gattacaaag gaagaactta cgaatgtgtt tctgcaaaag
     1441 tcagtgatga ggaaatgtcc ttgagaattg tttcccttgt tagcagctgc tgtgttctaa
     1501 gtgtgacacc tttacaggtg taaaactcct cggtcaggac atcttcaggg ccactccctt
     1561 ttccaaactt ttttttattt ttaatgaatg ggtaaggagt ccacacaggg atcttccgta
     1621 acaccagtaa gtccccatcc cagttttaac tctaagcatt ttagcatttc ctttggtgga
     1681 aagtgggttg gtgtcaacag cagctagtta caaagctgct agattgttaa tgcaagggct
     1741 ttacggtggg ctgggctgag tgctggaatg ggagtgaggg gaatccctga actgaatggg
     1801 tgatcaaaaa ccgggtccag catgggcacc agatttcctg tggcagaaca ttctccttag
     1861 ttcctttgtt aaatgacaga aaatatttgg agtttacagc ttttcacgcc atggcatctt
     1921 ggtgtgaaag ggcaaattgg tatagtttta cttatctctt ctagaaaaga aataaattat
     1981 tgaaggaaaa ttatactgtg ctctgctagc attatactga acacccggca ttaccgtctt
     2041 tattgcgtac tggctcagac tcatgcctgt ttgtgcacac agggacgtgg tgtgtgggac
     2101 ttgtcatgga ttgtcctggg tatgtggggc ttgacttgga ttgtcctggg gtccagactg
     2161 aagtcacctc gtgaagctga gcctctgcta ttcaccttct gttaaaacag ctcagcaggc
     2221 tgtagtctca gtaggatttc tctggtgtct tggctccact tatgtcctgc aaacataata
     2281 aaccgtccta atgcactgtt tgcctttatc cacactttgg tcatttgaat ttcttcttac
     2341 aagttttgag actttttttt tttttatgtt tatcttggca gaatttttct ctaaaatcaa
     2401 tttaacttga tgctttaagg agacagtgtt ggaacttcaa attagaaatt atcacattga
     2461 gtcttcgtgg aatagttcat gaccaaaaag ggaataagaa aaacattcta gtatgatata
     2521 gtgggaattt atatattcac cactagtttg tccatgggga gtcatcctga ttgaagttgt
     2581 tttcaggttt ttcgtttctc tgttagcctt tctgttattc ttattgttgg tgcctttgtg
     2641 ttagaaaaca ttagattttt taaaattggt cattagtgaa ctgctttttc ctcatttttg
     2701 ttggaaaata tttaatatct cagtattaaa gctgtgcagc tttgaaaaaa taaaagacgc
     2761 ctaacatggt ggcacggcct aattaatccc agtacttcag agacagggag atctctgtga
     2821 gttcttttta aaaaaaaaat taaaagaatg gttaataaaa a
//
