LOCUS       NM_001002279            1755 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus ring finger protein 166 (Rnf166), mRNA.
ACCESSION   NM_001002279 XM_344784
VERSION     NM_001002279.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1755)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1755)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1755)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY606065.1.
            
            On Aug 30, 2004 this sequence version replaced XM_344784.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY606065.1, BC100057.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132290, SAMD00132293
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1755
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..1755
                     /gene="Rnf166"
                     /note="ring finger protein 166"
                     /db_xref="GeneID:365022"
                     /db_xref="RGD:1302950"
     exon            1..206
                     /gene="Rnf166"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..765
                     /gene="Rnf166"
                     /EC_number="2.3.2.27"
                     /note="RING-type E3 ubiquitin transferase RNF166"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF166"
                     /protein_id="NP_001002279.1"
                     /db_xref="GeneID:365022"
                     /db_xref="RGD:1302950"
                     /translation="MAMFRSLVASAQQRQPPAGPAGGDSGLEAQFSCPICLEVYHRPV
                     AIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKKVDKATHVEKQLSSYKAPCRGCN
                     KKVTLAKMRAHISSCLKVQEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNL
                     DQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDY
                     SIDEEAAFQAALALSLSEN"
     exon            207..363
                     /gene="Rnf166"
                     /inference="alignment:Splign:2.1.0"
     exon            364..476
                     /gene="Rnf166"
                     /inference="alignment:Splign:2.1.0"
     exon            477..591
                     /gene="Rnf166"
                     /inference="alignment:Splign:2.1.0"
     exon            592..699
                     /gene="Rnf166"
                     /inference="alignment:Splign:2.1.0"
     exon            700..1755
                     /gene="Rnf166"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggcctggat agggggcggc ggcggcggcg gcggcggcgg cctgccccgg catggcgatg
       61 ttccgcagct tggtggcctc cgcgcagcaa cggcagccac cggctgggcc cgcgggcggt
      121 gacagcggcc tggaggctca gttcagctgt cctatctgcc tggaggtgta ccatcggcca
      181 gtggccatcg gcagctgcgg ccacacgttc tgcggggagt gcctccagcc atgtctgcag
      241 gtgccgtccc ctctgtgccc gctctgccgt ctgcccttcg accccaagaa agtggacaaa
      301 gccacccatg tagagaagca gctctcatct tacaaagcac cctgtcgggg ttgcaacaag
      361 aaggtgacac tggcaaagat gagagcccac atctcctcct gcctgaaggt ccaggagcag
      421 atggctaact gccccaagtt cgtccctgtg gtgcccacat cccagcccat ccccagcaat
      481 atccccaacc ggtctacctt cgcttgtccc tactgtggag cccgcaatct ggatcagcag
      541 gagctggtga agcactgcgt ggaaagtcac cgtagcgacc ccaaccgtgt ggtatgcccc
      601 atctgctcag caatgccctg gggggacccc agctacaaaa gcgccaactt cctgcagcac
      661 ctgctgcacc ggcacaagtt ctcctacgac acctttgtgg actacagcat cgacgaagaa
      721 gctgccttcc aggccgccct ggctctgtcc ctctctgaga actgaggcac agcctagcca
      781 cctgccttgt ctggggcaga agacacactc cagcctcaag ggatagggcc gttgcccttc
      841 tgccctggca cctgcacagg agcgcacctc accgggccaa gtggaatttt ccacaaggag
      901 agctggtctc agaaccccca gggctgggat cctggctagc tggccccttg tcatcaagca
      961 gggccactgg gtcctggcca gcagcagtac tgggtcctcg gtgcttcaag gggcaggtgc
     1021 tggctgctgg gttagagccg ttgtctgcct ttcccagcct tgatgtctgt gtgtggaaaa
     1081 ggataaggtg ccctaagctg ccagcccacc cggtccctag cttcgcttcc accgtgagca
     1141 tttggtactg gcttttgtga tatttaggaa ccctgcgttt ttctatctta tcctgtgtga
     1201 taatcttttc acattttcta gagcaaagac aaagcagtta ctcttctatc gcaatacctg
     1261 tgtttgacta ggcagagcag tatttttatg gagcatttac aaagttatat tttttaaaaa
     1321 aaatcaaaaa taaacacttg tgggatcagt ttagagggag gagtatgggt gtagccagga
     1381 cttcattagt gtgacaggtg gaatccccaa gccatgtgct ttctgaggag gtggcccaag
     1441 tctgctgtgt ggttttttgg ttgttttgtt tttttgatga tgacccagaa gaaatcctag
     1501 catcccagcc aattgttgtg gctgctctca gcagacatag gacagcccag gtagaatgga
     1561 gccgttctgt cccctgtcac ctgccagagc caaccacaga tggggacttc cctcaccagt
     1621 ggtggagccc ttgaggacca gagagacctg cttggtggca ggtcaggcca gaaaacattt
     1681 gtcagatctt gttctgttca tggcataagt tgctgtcttt tcaaaagagt ttaaataaag
     1741 tgtttcccag caccc
//
