LOCUS       XM_017596793            4697 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 149 (Rnf149),
            transcript variant X1, mRNA.
ACCESSION   XM_017596793
VERSION     XM_017596793.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017596793.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4697
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4697
                     /gene="Rnf149"
                     /note="ring finger protein 149; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 60
                     ESTs, 2 long SRA reads, 2 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 147 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:363222"
                     /db_xref="RGD:1308460"
     CDS             238..1422
                     /gene="Rnf149"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF149 isoform X1"
                     /protein_id="XP_017452282.1"
                     /db_xref="GeneID:363222"
                     /db_xref="RGD:1308460"
                     /translation="MAARRRPAAGVGARDALAVLALALCAPGVGGGALEWYSATVSIE
                     YVDPQSNLTVWSVTESGRFGDSSLREERQGLVGVPRAPADAEGCAPDTRFVAPGALGN
                     APWVALVARGGCTFKDKVLAAARRNASAVVVYNQERYGNATEPMSHAGTGSIVVIMIS
                     YPKGREISDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIFY
                     YIQRFLYTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKD
                     VIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGDPEDAQDLPIPEAAPGS
                     VSVGNLSVTVQDEERSESNLPSSSSSEFGPHRPCLKEDAEEDTALLGAGRSDPQHGGS
                     IC"
ORIGIN      
        1 cagaccctcg cgcacgcgca ctcctcaagc ccgcgggcag gtccccaccc cttccgttgt
       61 cacgccccca gccacgcccc tccaggtacg cgtgcgccgc gggcccgccc ccgccgctct
      121 cggcggtgct cggcggtctc tcgcgagctg cggtcgcctc ctcagagcag caggctggct
      181 ggagcgagcg gtctcactct tcctcgcgct cttcctcagt ggcccggccg ggcggccatg
      241 gcggcgcggc ggcggcccgc ggctggcgtg ggagcccggg acgcgctcgc ggtgcttgcg
      301 ctggccttgt gtgctcccgg ggtgggcggc ggggcactcg agtggtactc cgccacggtg
      361 agcatcgagt acgtggaccc gcagtcgaac ctgacggtgt ggagcgtgac cgagagcggc
      421 cgcttcggcg acagctcgct cagggaggag aggcagggcc tggtgggcgt cccgcgcgct
      481 cccgcggatg cggagggctg cgcgcccgac acgcgcttcg tggcgcccgg cgccctcggc
      541 aacgcgccct gggtggcgct ggtggcgcga ggcggctgca ccttcaagga caaggtgctg
      601 gcggcggcgc ggaggaacgc ctcggccgtg gtggtctaca accaggagcg ctacgggaac
      661 gccaccgagc ccatgtccca cgcgggaaca ggcagcatag tcgtcatcat gattagctac
      721 ccaaaaggac gggagatttc tgatctggtg caaaaaggaa ttccagtaaa aatgaggata
      781 gagattggta ctcgtcatat gcaggagttc atcagcggtc agtctgtggt gtttgtggcc
      841 attgccttca tcacgatgat gattatctca ttagcatggc taatattcta ttatatacag
      901 cgtttcctat atactggctc acagtttgga agtcagaatc atagaaagga aactaagaag
      961 gttattggcc agcttccact acacactgtg aagcatggag agaagggaat cgatgttgat
     1021 gctgagaatt gtgcagtgtg tattgaaaac tttaaagtca aagatgttat cagaatcctg
     1081 ccatgcaagc atatttttca tagaatatgc attgacccat ggcttttgga tcaccgaacg
     1141 tgtccaatgt gtaaacttga tgtcatcaaa gccctgggat attgggggga ccctgaagat
     1201 gcacaggacc tacccatccc agaagctgcc ccaggaagtg tttctgttgg gaatctgagt
     1261 gtgacagtcc aagatgagga gaggagtgaa agcaaccttc catcatcttc ctcaagcgag
     1321 tttgggccac accgcccttg tcttaaagaa gatgcagagg aggacacagc attgctagga
     1381 gccggcagga gtgaccctca gcatggagga tccatctgct agtgccgtct tcattgacag
     1441 cctcaccgac agagccttgg cttgaataca ggacactcag ttttcactct agggcatagt
     1501 ttgtacactt gaaaacagtg gattctattt tactttacct ttcagattca ggtttgatat
     1561 acaaagggct gagatatttt attcctaaaa gactttaatt agccttcatc tatttatcta
     1621 ctaaagtatg atgtctatca taaatttcat tgtatcaaac tgtcacagat gtatgtggag
     1681 gggttgtttc tgagtactag actagcttct gtggtactat aaaacaagat tctgtttctc
     1741 aggcctttta gacaaagctc actcagtgga attgtgaaat gtagttcctt attgatcaat
     1801 gaactttccc tgaagcagac tctagaacct gtaaagtgag aaatcttgcc atgggcagtg
     1861 gtacacacct gcaaactcag gaggccgagg caagaggatc ttgacttcaa gcctaccctg
     1921 ggctacgtag caagactgct acgtaaaggg agagagaaat cagctgtctt gcactatatt
     1981 gtctatagaa actttagaac catgcatacc tttttattat gtgggattgt gaaaagaaca
     2041 ctagatgatt ttatgatttg catttttacc tttattgcct aatttctttt cacacttgga
     2101 aagagaaggg aatttatcca tttttttcta caaattaaaa aaaaacctgg caaaaatgcc
     2161 atattgcatg ttaaaaagta ttaaaatagt gattcattaa gaaaatcaag taggcatact
     2221 gtaatgtctc taaatgatta gtatattttg gtggatttaa tctttacaat taaaaatatg
     2281 taattaaaag tttgatcttg ttgttaaact aaaataacat tttcctaatg agattttaag
     2341 ccgattcaat actgtgacct tttgtccttc tttcctattt gatgttccca caggtgacgt
     2401 ctttgaggac tgtcgtctga gttctatata gtgcttagat acacacttat gaactaggag
     2461 tccttgttgt tgattctaaa cttgtgtttt atgtctactt tgtagacaaa aataaatgct
     2521 tactgacaat ttttctatgt aacaaatttt atttagcata gtcagcccta acattcagca
     2581 caaaaatttt acagaggata gaaaagaaag tgcattaata aaagctagtc ttgggccaga
     2641 gagatggctc agtggttaag agcactgaat gttctagagg ttcagagttc aattcccagc
     2701 aaccacgtgg tggctcacaa ccatctgtaa tgggatctga tgccctcttc tggtgcgtct
     2761 gaagactgct acagtgatat atatatatct taaaaaaatc tagtctttac gcaaaggaaa
     2821 atatgttctt gatcgaaata ttttacactt cagtgataaa ctgagaatgc tttttcttta
     2881 agtttatttt acgtatatgg gcactttgtc tgtgtgtaca tttgtgagtc atctaaatgc
     2941 cattaaatgc cgttagccag gggtggccag aagaggctat gtatcagatc tgctggcact
     3001 ggagttacag aggcttgtga actgccttgt gggtactagg tattaaacct gaattctctg
     3061 ggctagccac tgaactatct ctccagccca aaagagaatg ctgtaagaag ttggtttctg
     3121 gctgacagca gaagtagagg tcactgaccc atggtctgtc ttgctctttg cattaatgcc
     3181 ctcagctaga actgcctcca ggacaggaga cagacatgag tcaggaacac atccaggtct
     3241 gtcactctgc ccgtgaaagc ttctgccaag taaaagatgt gtgccatgga gttaggaaga
     3301 acttcataat cattctcaga tctattttcc atcttctcca gggcaaaact tagtcctttg
     3361 tctttcttca caagttctgt ttctatgtca gctacttctt ggtttaaatg ggaccattcc
     3421 ttctagtttc cagtaatctg ttttggtgat tctttgtttc aaggcattga gccctgacta
     3481 gctgtgatcc attttttcca tctgccatct ttttgtcact ggctacttag agctgctcag
     3541 attgtgtcct cactgattgt tccgtctcct ctgggaccaa cagtagtcac gggagccttg
     3601 aaagggtact gagaactttt ggcagtgtat ggagcacctg gtgtaaggat aaccagtgta
     3661 actactgggg tttgagaggg aggtatccag acacatataa agaggttcca ttttgcacac
     3721 gtagcatagg ggaggtcttt agtgggttgg ttccctggaa cagccatcat taaaaaagca
     3781 ggtccagtac aactttgagg tttttgtgta gagtaataag ggcagtttca tggtgtgtgt
     3841 ctctatttgt gtggacaaca tctcttagag ctggttctga gacatcacca tggtacccat
     3901 ataccgtctt cacaggcaga gaaagcatca gcatcaaggg cttgtctcca gaaaattgca
     3961 gaaagtatcc caactggaag ccagcaccaa gaaaatacaa ctttaaaggc taagtttatc
     4021 cttagagccc ttcttaagac ataatatttg ataaagtgtc ttaccaagct gtttttctcc
     4081 agtttgattt ttagctgctc catagtaaaa tacgtggtga gttttactga aagaaatgta
     4141 caaccagatg actataatcc gctgttgatg tagaaaatca tactttgaac actttttgga
     4201 gtctcaaagt tggctttata agttagcacc aaacctgtgt tcagtgcaag taggaaagca
     4261 tgaatttggc atgttagtgc tttgtttttt taagacataa cagggaaaat gctataacca
     4321 ttctaacagc cgatgaggct tgcttttaca aaaggatctt gtgatcgagc aaggtaagat
     4381 ggttttaatc atttagtcat tacagaaaaa aaaatttttt aaggcaggat ctgtttaatc
     4441 tgagtttgaa ctcaccatcc ttgtgcctca gccttcccag tggtgagatc acttctgact
     4501 aaacggtgat gtgaagattg gaggttgttt gctgtggttc ccgctttcct ggctttcgcc
     4561 cagcagtact gactttagtt ctcccagcag agaactggaa cagtcaccac actctacagg
     4621 tgatttgaag acttaagttg gattaaaaac tttgaagtta cctaacctat attaaactca
     4681 ttcaattata cttaaaa
//
