LOCUS       NM_001105778            3571 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ring finger protein 145 (Rnf145), mRNA.
ACCESSION   NM_001105778 XM_001067906 XM_213277
VERSION     NM_001105778.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3571)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3571)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   3  (bases 1 to 3571)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1, BC168651.1 and CA503504.1.
            
            On Mar 9, 2021 this sequence version replaced NM_001105778.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.737232.1,
                                           SRR26360186.2170741.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-287               JAXUCZ010000010.1  29507779-29508065
            288-503             JAXUCZ010000010.1  29512928-29513143
            504-3568            BC168651.1         197-3261
            3569-3571           CA503504.1         15-17               c
FEATURES             Location/Qualifiers
     source          1..3571
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q21"
     gene            1..3571
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /note="ring finger protein 145"
                     /db_xref="GeneID:287212"
                     /db_xref="RGD:1309561"
     exon            1..287
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     exon            288..503
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     CDS             320..2314
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /EC_number="2.3.2.27"
                     /codon_start=1
                     /product="RING finger protein 145"
                     /protein_id="NP_001099248.1"
                     /db_xref="GeneID:287212"
                     /db_xref="RGD:1309561"
                     /translation="MAAKEKLEAVLNVALRVPSIMLLDVLYRWDVSSFFQQIQRSSLS
                     NNPLFQYKYLALNMHYVGYILSVVLLTLPRQHLVQLYLYFLTALLLYAGHQISRDYVR
                     SELESAYEGPMYLEPLSMNRFTTALIGQLVVCTLCSCVMKTKQIWLFSAHMLPLLARL
                     CLVPLETIVIINKFAMIFTGLEVLYFLGSNLLVPYNLAKSAYRELVQVVEVYGLLALG
                     MSLWNQLVVPVLFMVFWLVLFALQIYSYFSTRDQPASRERLLFLFLTSIAECCSTPYS
                     LLGLVFTVSFVALGVLTLCKFYLQGYRAFMNDPAMNRGMTEGVTLLILAVQTGLIELQ
                     VVHRAFLLSIILFIVVASILQSMLEIADPIVLALGASRDKSLWKHFRAVSLCLFLLVF
                     PAYMAYMICQFFHMDFWLLIIISSSILTSLQVLGTLFIYVLFMVEEFRKEPVENMDDV
                     IYYVNGTYRLLEFLVALCVVAYGVSETIFGEWTVMGSMIIFIHSYYNVWLRAQLGWKS
                     FLLRRDAVNKIKSLPIATKEQLERHNDICAICYQDMKSAVITPCSHFFHAGCLKKWLY
                     VQDTCPLCHCHLKNSSQLPGLGTEPAPQPPVAGAEQNIVLQEGPEPPDHETPPGPGAQ
                     EGSGDNSEYINRSSASREGDADPGDGPQIAEGEACPVASA"
     exon            504..612
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     exon            613..704
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     exon            705..940
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1116
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1257
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1440
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1588
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     exon            1589..1945
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
     exon            1946..3571
                     /gene="Rnf145"
                     /gene_synonym="RGD1309561"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccaggccatg gcggccgccg ggcgctggtg ccggcgctcg gcccgggagc gcctttgtcg
       61 ccgcggagga tggtgacctc acggctcggg ccgcttccgc tgcctctgcc tcccgagacg
      121 ccgcagccga ggccggacgc gggagagccg ccgctgtaag ccgcgcatac cgggcccccc
      181 gccgtcggaa ccgaagatct caccggaggg gcgggaatcg gaaccgggca gcagcgaaca
      241 ccgccatccc cagtgccgcc ccgcaggcag ggaggctgcg gctccaggtc tgctccaagg
      301 aaacaatcaa agaccaaaca tggctgcaaa ggagaagctg gaggcagtgt tgaacgtggc
      361 cttgagggtg ccaagcatca tgctgctgga cgtcctgtac aggtgggacg tcagctcctt
      421 tttccagcag atccaaagga gcagcctcag caacaacccc ctcttccagt acaagtactt
      481 ggctcttaac atgcattatg taggttatat cttaagtgtc gtgctcctca ctttgcccag
      541 gcagcatctg gtgcagcttt atttgtattt tttgactgcc ctgctcctct atgctggaca
      601 tcagatatcc agggactacg taaggagtga actggagtct gcctatgaag gaccaatgta
      661 tttagaacct ctctccatga atcgctttac cacagcctta ataggtcagt tggtggtgtg
      721 caccctgtgc tcctgtgtca tgaagacaaa gcagatctgg ctgttctccg cgcacatgct
      781 tcctctgctg gctcgactct gcctcgtccc tctggagacc atcgtcatca tcaacaaatt
      841 cgctatgatc tttacaggat tggaagtcct gtactttcta gggtctaacc tcttagtacc
      901 gtataacctc gctaagtctg cataccggga gttagttcag gtagtggagg tgtacggcct
      961 tctggccttg ggaatgtccc tgtggaacca gctggtggtc cccgtgctct tcatggtctt
     1021 ctggcttgtt ttatttgctc ttcagatcta ctcctacttc agcacccgcg atcagcctgc
     1081 ttcccgggag aggcttctct tccttttcct gacaagcatc gccgagtgct gcagcacacc
     1141 ctactccctt ctgggcctgg tcttcacggt gtcctttgtt gccttgggtg ttctgacgct
     1201 ctgtaagttc tacctgcagg gatatcgagc cttcatgaat gatcctgcca tgaatagggg
     1261 gatgacggaa ggagtcactc tgctgatcct ggcggtgcag acggggctca tagaactgca
     1321 ggtggttcac cgtgcgttcc tgctcagcat catcctcttc attgtcgtcg cctctatcct
     1381 gcagtccatg ctggagatcg cagatcccat tgttttggca ctgggagcgt ctagagacaa
     1441 gagtttgtgg aaacacttcc gtgctgtgag cctctgcttg ttcctcctcg ttttccctgc
     1501 gtacatggcc tacatgattt gccagttctt ccacatggac ttctggcttc tcatcatcat
     1561 ctccagtagc atccttacct ctctccaggt tctgggaaca ctttttattt acgtcttatt
     1621 tatggttgag gaattccgca aagagcccgt ggaaaacatg gacgatgtca tctactatgt
     1681 gaatggcact taccgcctgc tggagtttct tgtggcgctc tgtgtggtgg cttacggcgt
     1741 ctcagagacc atctttggag agtggaccgt gatgggctcc atgatcatct tcatccattc
     1801 ctattacaac gtgtggcttc gtgcccagct gggctggaag agcttccttc tccgcaggga
     1861 cgctgtgaat aagattaagt ctctccccat cgctacgaaa gagcagcttg agagacacaa
     1921 cgacatctgt gccatctgtt accaggacat gaaatccgct gtgatcacac cttgcagcca
     1981 tttcttccat gcaggatgtc ttaagaaatg gctgtatgtc caggatacct gccctctgtg
     2041 tcactgccat ctcaaaaact cctcccagct tccaggactg gggacagaac cggctccaca
     2101 gcctcctgtg gcgggggctg agcagaacat tgtacttcag gagggtcctg aacccccgga
     2161 ccatgagact cctccagggc ctggggccca ggaaggttct ggagacaata gtgaatacat
     2221 caacagaagc tcagccagcc gggagggaga tgctgatcct ggagacggtc ctcagattgc
     2281 agaaggtgaa gcgtgtcctg tggcgtccgc ctagaggaga acgaggcttg gagctctgtg
     2341 ctgtggagaa ggccacccaa ggtgggattc acgcccagat ctgaggagtg aatgtaggag
     2401 aggattaggc aggaacctga cattccaagg atctactcca ggggtactca gtggacacca
     2461 cctgctctcc accccacttc acgttgttgg agaaattttg caatgtacac taatcaaaat
     2521 gtatttataa gttctatgct gatgttttgt agaggtttgc caagaaagtt taacctcggc
     2581 aacttgagga atggcccctg attcgtgagg gataatgaag tcgggtctga gtgtttgaaa
     2641 ggggctaaga ggacgaacga agatctggag gtcagtcagg tgggaagatg aaggcagagg
     2701 tggacctggc tgtcccttct tcccacgggg acaggatcgt cttgattgtg tagtatgggt
     2761 aacggccggc tcttgtctcc gctccccttt ccctcagttg attaaaacca ccaaatgatt
     2821 ctgaagtttt ctacagaacc gcaatgaaat caaagatgta gacgcattga ctgtgctcta
     2881 agacagagcc gcacacacgt cagggtgtgc ctgggaggag ggcgggcatg cactgggcct
     2941 tgggtgcgtt catgtcacct gagactcctg aacttgatgc tgcagtccac ttattctgat
     3001 gtatatggag cttttgttaa tatagtgtat acttggttgg ctgtgtgaag taaactaaaa
     3061 ctctaatgaa cactttggag tccactttaa caaaggaggc caaagtggga ggggctttag
     3121 ggcactgata aaggccctgg gtgtacggtc caatcctgtg taatgtttaa ttctcgcaac
     3181 tgaatcaaaa gcagtgttaa attatggcag tgtttgcact ttgggaatga gtactgagct
     3241 gtatgacccc actctgcaga caccactttt gaagctgtta atacactctg caccctttct
     3301 ttgacaagga tgtgtcatat ttcaattttt acattcatca tggctgcagg tagaactggg
     3361 gaggggggga tgtcattttt ttatgggatt ttgatatgaa aagaaactag tcatttattt
     3421 atacaataag cttggctcaa aaaaagaaaa gcgtatttca gacttggtat tcctactgtg
     3481 ggatgtggtt ttcctttgtt tttagtagca aatgtggatg tagactgaca gacatggctg
     3541 aatgtcttaa taaatttaaa tttgaagata a
//
