LOCUS       NM_001108881            3159 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ring finger protein 144B (Rnf144b), mRNA.
ACCESSION   NM_001108881 XM_001057893 XM_344576
VERSION     NM_001108881.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3159)
  AUTHORS   Benard,G., Neutzner,A., Peng,G., Wang,C., Livak,F., Youle,R.J. and
            Karbowski,M.
  TITLE     IBRDC2, an IBR-type E3 ubiquitin ligase, is a regulatory factor for
            Bax and apoptosis activation
  JOURNAL   EMBO J 29 (8), 1458-1471 (2010)
   PUBMED   20300062
REFERENCE   2  (bases 1 to 3159)
  AUTHORS   Ebstein,F., Lange,N., Urban,S., Seifert,U., Kruger,E. and
            Kloetzel,P.M.
  TITLE     Maturation of human dendritic cells is accompanied by functional
            remodelling of the ubiquitin-proteasome system
  JOURNAL   Int J Biochem Cell Biol 41 (5), 1205-1215 (2009)
   PUBMED   19028597
REFERENCE   3  (bases 1 to 3159)
  AUTHORS   Ng,C.C., Arakawa,H., Fukuda,S., Kondoh,H. and Nakamura,Y.
  TITLE     p53RFP, a p53-inducible RING-finger protein, regulates the
            stability of p21WAF1
  JOURNAL   Oncogene 22 (28), 4449-4458 (2003)
   PUBMED   12853982
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001108881.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.36425.1,
                                           SRR26643429.51975.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               JAXUCZ010000017.1  17768883-17769037   c
            156-346             JAXUCZ010000017.1  17680413-17680603   c
            347-451             JAXUCZ010000017.1  17666309-17666413   c
            452-512             JAXUCZ010000017.1  17656446-17656506   c
            513-711             JAXUCZ010000017.1  17648589-17648787   c
            712-856             JAXUCZ010000017.1  17646546-17646690   c
            857-946             JAXUCZ010000017.1  17642664-17642753   c
            947-3159            JAXUCZ010000017.1  17639079-17641291   c
FEATURES             Location/Qualifiers
     source          1..3159
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..3159
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /note="ring finger protein 144B"
                     /db_xref="GeneID:364681"
                     /db_xref="RGD:1308856"
     exon            1..155
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            156..346
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /inference="alignment:Splign:2.1.0"
     CDS             182..1087
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /EC_number="2.3.2.27"
                     /note="IBR domain containing 2"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF144B"
                     /protein_id="NP_001102351.1"
                     /db_xref="GeneID:364681"
                     /db_xref="RGD:1308856"
                     /translation="MDSVDGLQCLTMTAENPPSGDLIPAPLVTCKLCLCEQSLDKMTI
                     LQECQCIFCTPCLKQYMVLSIREGCGSPITCPDMVCLNHGTLQEAEIACLVPVDEFQL
                     YQRLKFEREVHMDPLRTWCPVADCQTVCHITAGDPGQPVSVECPSCHLKFCSCCKDAW
                     HEESSCRDSQSAMPEHGALFGTDADSPIKQCPVCRIYIERNEGCAQMMCKNCKHTFCW
                     YCLQNLDNDIFLRHYDKGPCRNKLGHSRASVMWNRTQVVGILVGLGVIALVTSPLLLL
                     ASPCIICCVCKSCRGKKKKHDPSTT"
     exon            347..451
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            452..512
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            513..711
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            712..856
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            857..946
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            947..3159
                     /gene="Rnf144b"
                     /gene_synonym="Ibrdc2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagcggggt gcaagggccg caggccgccg gagagagccc caggatggta gctaggagat
       61 tggaaagcct ttgatgccag aagcctccgg ctggagccgc tgacaaccca gcccttgccc
      121 ctccgagagt ctcaggctgt ggctcagtcc tcaagggata gaggaggctg ctgacaggct
      181 gatggattct gttgatgggc ttcagtgtct gaccatgact gcggaaaacc caccctctgg
      241 agacctgatc cccgctccgc tcgtcacttg caagctctgc ctatgtgaac agtctctgga
      301 caagatgacc atactccaag agtgccagtg tatcttttgt acgccttgcc tgaaacagta
      361 catggtgctg tcaatccgag aaggatgtgg ctctcctatc acttgtcctg acatggtgtg
      421 cctaaaccac gggaccctgc aggaagccga gattgcctgt ttggtgcccg tggatgagtt
      481 tcagctttat cagcggttaa agtttgaacg agaggtccac atggaccccc tccggacatg
      541 gtgtcctgtc gcagactgcc agacagtgtg ccatatcaca gcaggagacc ccggacagcc
      601 cgtgtcggtg gagtgccctt cttgccacct gaaattctgc tcatgttgca aggatgcttg
      661 gcatgaggag tcctcctgcc gagacagcca gtcggcgatg ccagagcatg gggccctctt
      721 tgggacggat gcggactccc ccatcaagca gtgcccggtt tgccgcatct acattgagcg
      781 caacgaaggc tgcgcccaga tgatgtgtaa gaactgcaag cacacgtttt gttggtactg
      841 cctgcagaac ctggacaatg acatattcct caggcactat gacaaaggac cgtgcaggaa
      901 taagctgggc cactcgagag catcggtaat gtggaaccga acacaggtcg tggggatcct
      961 tgtgggatta ggtgtcattg ccttggtgac ttcacccttg ctgctcctgg cctctccctg
     1021 cataatctgt tgtgtctgca agtcctgtcg gggcaagaaa aaaaagcacg atccgtccac
     1081 aacctaaagt cacctgcaca gacatccggg ttgtatgaga cagcacatcg gtaaaagccc
     1141 catttagtga ccttgcctcc ttctccttgc caaactttgg aagtgcctct gtccagactt
     1201 tgaacctgcc tgaaagcact gggtgttgga aagggccaca tctcgtctcg ggtgtgagtg
     1261 tgcctgtgta tcgagaagca gccccgcagt ccagactagg tctgtagagc aggtcgggaa
     1321 cttcgcttta gccggggaga ctaacacatc accatcttac cgtccgaagg atcccacccg
     1381 gctgttcatc tcccatccga accaaggagc ccggatgtat cttcatcgtg gtaattaatg
     1441 gtcacgccgt gccaggcagc attgccaact gagctaacgt ctacgtcggt tccactgcca
     1501 ggagacacat ggcagaagcc cagagtcgga ggggaaggat gacaccgcat aataagaagt
     1561 tctctgagca atggagccag ccgcttatct caggagtcgc cgtactggct ggcgtaccta
     1621 tgacggctac cgagtgtgca cttcttcagc gttcccacgg tgacttggca gagacataat
     1681 agctctctct ccctgtgtga tctcatgttc aggcagggga aactgctgtt cagagggagt
     1741 cgtcccttcc caggaaaagg tggtaacctg taagacagca tggcctcact cagtgtctgt
     1801 tgtttggcac atgctggtct aaggctcacc actcacagtc agcccgcagc agctgtggtc
     1861 tataaaagtg ttctatacgg gatgcgagtg ggaaagtttc aaaggcccgg ctgtagacgg
     1921 cagggtcttt tcttgggctc tgtggccata ctcccgacag atcaggagtt gcaccagaca
     1981 gtgtacacca acagtacata ttgtagttca ttcacacatg gagaatccgt gcgactccaa
     2041 ctgggcatgt gggagatatc caacagatga tacaaaatca gattatttta aaagaccttg
     2101 tccctttctg tgactaaaat gattcatcta tcagcataag agggtttttt tttgttttgt
     2161 tttgtttgct tagtacacgt gctaattttt gttctaagtc cctaacttac gcaagagggt
     2221 agacacacaa aaaaaatctt ttaaaacaac ccctcagtgc agttttctcc ccctgtaatg
     2281 tgaaatcagg ttacctacct tcagacacaa tttagagcag ctctttgctc agcctaattt
     2341 agtctcgttc tcccagaagc gtcctcaaga cgcttgagga cacaatctgt gtcctcaaga
     2401 aacagataag atggggctgg agggatggct cagtggttaa gagccccgac tgctcttcca
     2461 gaggtcctga gttcaattcc cagcaaccac atggtggctc acaaccatct gtaatgagat
     2521 ctgatgccct cttctgatgt gtctgaagac agctacagtg tacttacata tgataaataa
     2581 ataaatcttc aaaaaaaaaa agggggaaat agataagatg acaacgagaa gttggatgga
     2641 aatagttcac gggtcttcag tcgctgatct gcgtcacctc agtgtgacac atcctgcctc
     2701 ttacacgagg agtcagcaaa taggttttga gaagacaaac atatttttct gtctagcatt
     2761 atacagttgc cattagcaaa gcagtctggt gcttcctaag aactgggtgt gttctgtgtt
     2821 aacagagacc tctcctggaa gccgtctggg gagagtattc aggggctatt ctgttttccg
     2881 aggtaattgg gtgacgagat ggttaaactg ctgctatccg agatccgtta tcaaagactg
     2941 acgcctggcc tctgcaatgg gatgtatcct aagtggggat gtatgtattc aagggatcac
     3001 gtgtgtatat tagcatctga cgtatgtaca gaacattccc tggccgtgta ctttttttta
     3061 ttcaccgttt gtataaaaca tagaactcta gaaaacttct gaatggcaac cagcccaaat
     3121 ccttttaatc atttatcaga aaatgtcttc atataaagt
//
