LOCUS       NM_001082410            1657 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ring finger protein 144A (Rnf144a), mRNA.
ACCESSION   NM_001082410 XM_576010
VERSION     NM_001082410.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ho,S.R., Mahanic,C.S., Lee,Y.J. and Lin,W.C.
  TITLE     RNF144A, an E3 ubiquitin ligase for DNA-PKcs, promotes apoptosis
            during DNA damage
  JOURNAL   Proc Natl Acad Sci U S A 111 (26), E2646-E2655 (2014)
   PUBMED   24979766
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Hoja,M.R., Wahlestedt,C. and Hoog,C.
  TITLE     A visual intracellular classification strategy for uncharacterized
            human proteins
  JOURNAL   Exp Cell Res 259 (1), 239-246 (2000)
   PUBMED   10942595
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Mar 8, 2007 this sequence version replaced XM_576010.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.23467.1,
                                           SRR26643285.24315.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                JAXUCZ010000006.1  48748089-48748177   c
            90-272              JAXUCZ010000006.1  48722363-48722545   c
            273-418             JAXUCZ010000006.1  48670784-48670929   c
            419-523             JAXUCZ010000006.1  48656809-48656913   c
            524-584             JAXUCZ010000006.1  48656584-48656644   c
            585-792             JAXUCZ010000006.1  48649960-48650167   c
            793-940             JAXUCZ010000006.1  48646168-48646315   c
            941-1030            JAXUCZ010000006.1  48640450-48640539   c
            1031-1657           JAXUCZ010000006.1  48631648-48632274   c
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..1657
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /note="ring finger protein 144A"
                     /db_xref="GeneID:500636"
                     /db_xref="RGD:1561737"
     exon            1..89
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /inference="alignment:Splign:2.1.0"
     exon            90..272
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /inference="alignment:Splign:2.1.0"
     exon            273..418
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /inference="alignment:Splign:2.1.0"
     CDS             284..1162
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /EC_number="2.3.2.27"
                     /note="ring finger protein 144; probable E3
                     ubiquitin-protein ligase RNF144A"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF144A"
                     /protein_id="NP_001075879.1"
                     /db_xref="GeneID:500636"
                     /db_xref="RGD:1561737"
                     /translation="MTTARYRPTWDLALDPLVSCKLCLGEYPAEQMTTIAQCQCIFCT
                     LCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREV
                     LFDPCRTWCPASTCQAVCQLQDIGLQTPQLVQCKACDMEFCSACKARWHPGQGCPETM
                     PISFLPGETSSAFKVEEGDAPIKRCPKCRVYIERDEGCAQMMCKNCKHAFCWYCLESL
                     DDDFLLIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVL
                     CCKCKCSKGDDDPLPT"
     exon            419..523
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /inference="alignment:Splign:2.1.0"
     exon            524..584
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /inference="alignment:Splign:2.1.0"
     exon            585..792
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /inference="alignment:Splign:2.1.0"
     exon            793..940
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1030
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /inference="alignment:Splign:2.1.0"
     exon            1031..1657
                     /gene="Rnf144a"
                     /gene_synonym="RGD1561737; Rnf144"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcagcagca cccgcgagcc ggcaccgggc ggggccatcg caaccgcgcg caaagaggcc
       61 gagcgggagc ccggaccgcg cgggaccagg tactttgtgc tctgccgagt ctggaatacc
      121 cagggctact ttctcagagt catatggact cttagtacag agacctcttt cttcaaccta
      181 tggaaagaag cacctgaatg ctcataaaca cagcaggaac ccaagacctg gctggaagac
      241 accacctctc ctcatctctg cccctcccac agactgttct gcgatgacca ctgcaagata
      301 tcggcccacc tgggacctgg ccctcgaccc cctggtgtcc tgcaagctgt gcctcgggga
      361 gtacccagcg gagcagatga caaccattgc ccagtgccag tgtatcttct gtaccctgtg
      421 cctgaaacag tatgttgagc tcttgatcaa agaaggactg gaaactgcaa ttagctgccc
      481 ggatgctgcc tgtcctaaac agggccacct tcaggagaat gagattgagt gtatggttgc
      541 agctgaaatt atgcagagat ataaaaagct acaatttgaa agagaggtgc tctttgaccc
      601 ttgtcggacg tggtgcccag catccacctg ccaggccgtg tgccaactcc aggacatagg
      661 gctgcagacc ccgcagctgg tgcagtgcaa agcctgcgac atggaattct gttctgcttg
      721 caaagcccgc tggcaccctg gccaaggctg cccagagacc atgcccatca gcttccttcc
      781 cggggagacc agctctgctt tcaaggtgga agagggcgac gcacccatca aacgctgccc
      841 caagtgcagg gtgtacatcg agcgggacga gggctgtgca cagatgatgt gtaagaactg
      901 caagcatgcc ttctgctggt actgcctgga gtctctggac gatgactttc ttctgataca
      961 ctatgacaag gggccctgcc gcaacaagct gggtcactcc cgggcatcag tgatctggca
     1021 tcggacacag gtggtgggga tttttgctgg atttgggctc ctgctcttag tggcctcccc
     1081 gttcttgctc ctggccacac cctttgtact ttgctgcaaa tgcaagtgca gtaaaggtga
     1141 cgatgacccg ttgcccacct agaggacggc atgatgctgg aacagacccc ttcctcggga
     1201 cgtgtggctc ccctaccccc taccacccct ctcactaaac atggtttttg ccttatgtgc
     1261 cccgttgagc ttcagtgtcc ggctcgctgc agagatttca gggatgatgt cagcgagtgg
     1321 gcagaggccc aggcgtggtc tcccgggtgc tgctgaggca acggaggcaa agtgggggcg
     1381 gggggcgggc gtcccacaga gtcattctgt gtctgcagac ctggctgggg gtagcatcag
     1441 ctgcacaccg ggcagtttcc tcccctggga gtttctgaga cccgcttgga cagagggaca
     1501 ctttgacttc aagatggcat atgttgtcag tagaagtctt cgaaaattag tactctctcc
     1561 ggccagcacc tgaatatccg acttgagaaa aaaaaacccc accctgtttg tgacaactgt
     1621 ttttattcct aaaggcattt agtaaaaatc cttttta
//
