LOCUS       XM_039099715            2170 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 128 (Rnf128),
            transcript variant X3, mRNA.
ACCESSION   XM_039099715
VERSION     XM_039099715.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099715.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2170
                     /gene="Rnf128"
                     /gene_synonym="RGD1566282"
                     /note="ring finger protein 128; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 27
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:315911"
                     /db_xref="RGD:1566282"
     CDS             136..915
                     /gene="Rnf128"
                     /gene_synonym="RGD1566282"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF128 isoform X3"
                     /protein_id="XP_038955643.1"
                     /db_xref="GeneID:315911"
                     /db_xref="RGD:1566282"
                     /translation="MIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPWVNHYSIFFVSV
                     SFFIITAATVGYFIFYSARRLRNARAQSRKQRQLKADAKKAIGRLQLRTLKQGDKEIG
                     PDGDSCAVCIELYKPNDVVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDILKALGIEV
                     DVEDGSVSLQVPVSNEASNTASPHEEDNRSETASSGYASVQGADEPPLEEHAQSANEN
                     LQLVNHEANSVAVDVVPHVDNPTFEEDETPDQEMAVREVKS"
ORIGIN      
        1 cttttgctta ggatcattca tcttgggtca taaaaactag gaggattata aaccttgata
       61 agcattggaa tggcttgaac aatgacattc tcagaacatt cagaaagata aggtgcagga
      121 gacattgttg cgatcatgat tggcaatctg aaaggaacaa aaattctaca gtccattcaa
      181 agaggcatcc aagtaacaat ggtcatcgaa gtaggcaaaa aacatggccc ttgggtgaat
      241 cattattcaa ttttcttcgt ttccgtgtcc ttttttatta ttacagcagc aactgtgggc
      301 tattttatct tttactctgc tcgaagatta cggaatgcaa gagctcaaag taggaagcag
      361 aggcagttaa aggcagatgc taaaaaagct attggcaggc ttcagctgcg caccttgaaa
      421 caaggagaca aggaaattgg ccctgatgga gatagctgtg ctgtgtgcat cgagctctat
      481 aagcccaatg atgtggtgcg catcctaacc tgcaatcata ttttccataa gacgtgtgtg
      541 gacccatggc ttttagagca caggacttgc cccatgtgca agtgtgacat tctcaaagct
      601 ctgggaattg aggtggatgt tgaggatgga tcagtgtctt tacaagttcc tgtttctaat
      661 gaagcatcta atactgcctc tccccacgaa gaggacaacc gcagtgagac tgcttcatct
      721 ggatatgctt cagtacaggg agcagatgag ccacctctgg aggagcatgc gcaatcagca
      781 aatgaaaatc tacagctggt caaccatgaa gcaaattctg tggctgtgga tgttgttccc
      841 catgttgaca acccaacctt tgaggaagat gaaactcctg atcaagagat ggctgttcga
      901 gaagttaaat cctaaaatct gtatcaatag aaaacttgaa ccgttagtaa caacaggact
      961 gccaatcagg acctagttta ctaagaatga actgagtaaa tgtaaaacaa gaatgatact
     1021 gaatgtgctg agatgactaa tattatatta tagttaaatg gcttaacata tttaacccag
     1081 taccattttc cacaaactca ctgtaacatt ttttcatagg caagtttcct cttgatgata
     1141 gtgatagcaa catttttaaa cattcagaac tgtctacaag tagtcagggt tttcattcac
     1201 aaaaactttc taataaaaat atgttgcttt aaaaatgtgg agtagttgtg atcactttgt
     1261 tttgtgatag tatcctaatt gaacaatact actactttag cttgggctct atgtgtcagg
     1321 gtttgtctcc aggtgcttat actgatctgg aatttgtaaa aagcaatgcg aacttaggca
     1381 ttaagttgat agtacaagat taaagcaaaa tactcatttt aaccttttca ttttaaaatt
     1441 aagctgtgta cgtgattcat gtgagtgctg agcatagctt atcagaaaaa tgtgaactga
     1501 attggttgat cagtggatta gcgacaccac acaagattgt agacataaaa agtttcttac
     1561 aaaaaaaaat tgtaaactat ttctcaaact tgaagtttcc aaaagcacag gatagcaact
     1621 accatcacct ttgaaaataa taatagctga ataaatcgta gaaaattggt tactgtgcag
     1681 aatccatcga cagaaaatgt tctctaagat tttttggtag aaaatatttt ccaaacaata
     1741 ttgactttga aagttgagtt tacatttggc cctgcggtct ttaatgacat taaatttaaa
     1801 ttctgtccat atatctataa ttttgtgaat gcgttttgtt ggtgtttgaa aaagaatcac
     1861 gggaaggggg gattccaggt gccttactat aaagtttgaa gcttcaacca ccaaagttaa
     1921 atagagctat tgaaaacatg cactttattt ctactttgtg tggcttgtcc attagttttc
     1981 ttcccagtgc aaattcccac agaatttagg caaaaaaata gaacagacgt gtatttttgt
     2041 ttgccgaata tataatggat gaaaccattg cattcttata cactgatttg aaaatggtgt
     2101 aaatacgccc cgatttgtac tgattctctt taaatataaa atgtaaataa aatattccaa
     2161 tgaaagattg
//
