LOCUS       NM_001399272            1514 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus ring finger protein 122 (Rnf122), transcript
            variant 2, mRNA.
ACCESSION   NM_001399272 XM_039095093
VERSION     NM_001399272.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Peng,Z., Shi,T. and Ma,D.
  TITLE     RNF122: a novel ubiquitin ligase associated with calcium-modulating
            cyclophilin ligand
  JOURNAL   BMC Cell Biol 11, 41 (2010)
   PUBMED   20553626
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Wang,L., Gao,X., Gao,P., Deng,W., Yu,P., Ma,J., Guo,J., Wang,X.,
            Cheng,H., Zhang,C., Yu,C., Ma,X., Lv,B., Lu,Y., Shi,T. and Ma,D.
  TITLE     Cell-based screening and validation of human novel genes associated
            with cell viability
  JOURNAL   J Biomol Screen 11 (4), 369-376 (2006)
   PUBMED   16751333
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Jan 5, 2022 this sequence version replaced XM_039095093.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.353332.1,
                                           SRR22582416.1562137.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760386,
                                           SAMN06621351 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               JAXUCZ010000016.1  67727249-67727375   c
            128-284             JAXUCZ010000016.1  67724145-67724301   c
            285-330             JAXUCZ010000016.1  67717817-67717862   c
            331-372             JAXUCZ010000016.1  67717518-67717559   c
            373-455             JAXUCZ010000016.1  67714245-67714327   c
            456-1514            JAXUCZ010000016.1  67712936-67713994   c
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.3"
     gene            1..1514
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="ring finger protein 122"
                     /db_xref="GeneID:502091"
                     /db_xref="RGD:1561238"
     exon            1..127
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..570
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="RING finger protein 122 isoform 2"
                     /protein_id="NP_001386201.1"
                     /db_xref="GeneID:502091"
                     /db_xref="RGD:1561238"
                     /translation="MVNVERILALFQHQIFLWQDEGRRLLAVEGGPVGPEGCFCGLGL
                     VSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGY
                     KEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPM
                     CNKPIAGPTETSQSIGILLDELV"
     exon            128..284
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            285..330
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            331..372
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            373..455
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            456..1514
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaggtacaca gaagagccat ggtaaatgtg gagaggattt tggccctctt tcagcatcag
       61 atatttctgt ggcaggacga aggaaggagg ctactggcag tagaaggagg tcctgttggt
      121 cctgaagggt gtttctgtgg cctggggctg gtgagtacca acaagtcctg ctcaatgcca
      181 ccaatcagtt tccaggacct tcccctcaac atctacatgg tcatcttcgg cactggcatc
      241 tttgtcttta tgctcagtct catcttctgc tgctacttca tcagcaaact ccggaaccag
      301 gcacagagcg agcgatacgg ctacaaggag gtggtgctta aaggtgatgc taagaagtta
      361 cagctctatg ggcagacctg tgcagtttgt ctggaagact tcaaggggaa ggatgaacta
      421 ggtgtgcttc cgtgccagca tgcctttcac cgcaagtgtc tggtgaagtg gctagaagtg
      481 cgttgcgtct gccccatgtg caacaagccc attgctggcc ccacggagac ctcacagagc
      541 attgggatcc tgctggatga attggtgtaa gcgctccttg cgtgcggata ctggagaaga
      601 ctgctgactt tgcgggcacc tgggttccgc tacacaagga acaagattca cactcaccta
      661 taggcaggga tgacagagct gcccttctac catcaccact ggaccagtac cagacttgtc
      721 cagtgtctgc ctcccagggc ttctctctgt tatacatttc caatggcctc atccaggtag
      781 actactctat cctggtactg gactgactat ccatccaccc gcctcatctg ggaaggagtc
      841 aactctgtga ctgtgaacat gggcacttcc ctttggagaa cgagcaactc tgaccttgaa
      901 agggtcaccc ctctgtccca cccacgtcct tcactcctgc cagagccttc catgggatgg
      961 tttccagggg aaaggaaaga aagatcaaga cacgaagatg aaaggctctg tgtaaagtaa
     1021 aggaaggcag ggacctaaaa aagggaaaag tcaatgttta cacgagatgt cggaaacaaa
     1081 ggccagcctc gtcctggccg actacagggt gatgggacca accctcccct ggtaggatct
     1141 gaggtgctat tcattctctc cctggccctg gttgatctca gagccgtcta gtcacggttg
     1201 gttttgtttt gaagagactc ctctctatag gaaggggtct aatcctcaag tccactttca
     1261 ggggcttttt ttttagaagc aaaacgggcc tcgggatggg gatggtcggg agggtacagt
     1321 aatgcggatg tctgcttcct ctctgtaaat agtattttta tacttcttca ccatctcagg
     1381 cttacacatg cggccctgca ggatggaggg ggtggagtgt tcccttcctc ctcgcctgag
     1441 cagggcggct gagagtggga aaaggttatg tatttaaaga aaattaaatt taataacatg
     1501 tttctctaat caaa
//
