LOCUS       NM_001107540            1212 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus ring finger protein 121 (Rnf121), mRNA.
ACCESSION   NM_001107540 XM_001068282 XM_238909
VERSION     NM_001107540.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1212)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 6, 2022 this sequence version replaced NM_001107540.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.941820.1,
                                           SRR22582424.1882877.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                JAXUCZ010000001.1  165851848-165851923 c
            77-114              JAXUCZ010000001.1  165830557-165830594 c
            115-256             JAXUCZ010000001.1  165827637-165827778 c
            257-411             JAXUCZ010000001.1  165812467-165812621 c
            412-519             JAXUCZ010000001.1  165808807-165808914 c
            520-640             JAXUCZ010000001.1  165804731-165804851 c
            641-774             JAXUCZ010000001.1  165792434-165792567 c
            775-876             JAXUCZ010000001.1  165791775-165791876 c
            877-1212            JAXUCZ010000001.1  165789360-165789695 c
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..1212
                     /gene="Rnf121"
                     /note="ring finger protein 121"
                     /db_xref="GeneID:308871"
                     /db_xref="RGD:1307857"
     exon            1..76
                     /gene="Rnf121"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..997
                     /gene="Rnf121"
                     /EC_number="2.3.2.27"
                     /codon_start=1
                     /product="E3 ubiquitin ligase RNF121"
                     /protein_id="NP_001101010.1"
                     /db_xref="GeneID:308871"
                     /db_xref="RGD:1307857"
                     /translation="MAAVVEVEVGGGAVAEREIDEVDMSDLSPEEQWRVEHARMHAKH
                     RGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWW
                     RFLVIWIFFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFT
                     LFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSESGMPT
                     KHLSDSVCAVCGQQIFVDVNEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCK
                     EKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGISYILGLE"
     exon            77..114
                     /gene="Rnf121"
                     /inference="alignment:Splign:2.1.0"
     exon            115..256
                     /gene="Rnf121"
                     /inference="alignment:Splign:2.1.0"
     exon            257..411
                     /gene="Rnf121"
                     /inference="alignment:Splign:2.1.0"
     exon            412..519
                     /gene="Rnf121"
                     /inference="alignment:Splign:2.1.0"
     exon            520..640
                     /gene="Rnf121"
                     /inference="alignment:Splign:2.1.0"
     exon            641..774
                     /gene="Rnf121"
                     /inference="alignment:Splign:2.1.0"
     exon            775..876
                     /gene="Rnf121"
                     /inference="alignment:Splign:2.1.0"
     exon            877..1212
                     /gene="Rnf121"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccggccgtg aagatggcgg cagtggtgga ggtggaggtt ggaggaggtg ctgttgcgga
       61 aagggagata gatgaggttg atatgtcaga cctctcccca gaggagcagt ggagggtcga
      121 acatgcacga atgcatgcca aacatcgtgg ccatgaagcc atgcacgctg aaatggtcct
      181 catccttatt gctaccttgg tggtggccca gctgctcctg gtacagtgga aacagaggca
      241 cccccgttct tataatatgg tgaccctctt tcagatgtgg gttgttcccc tctatttcac
      301 agtgaagctg cattggtgga ggttcttggt gatctggatc ttcttctctg ctgtcacagc
      361 ctttgtcacc ttccgagcca cacggaagcc tctggtacag acaaccccaa ggttggttta
      421 taaatggttc ctgctaatct ataagatcag ctatgccact ggcattgttg gctacatggc
      481 tgtcatgttt accctctttg gtcttaactt attattcaag attaaaccag aagatgcaat
      541 ggactttggt atctctcttc tcttctatgg cctctactat ggagttcttg agcgagactt
      601 tgcagaaatg tgtgcagact atatggcatc aaccataggg ttctacagtg agtcgggcat
      661 gcctaccaag cacctctcag acagcgtgtg cgctgtgtgt gggcagcaga tctttgtgga
      721 tgttaatgaa gagggcatca tcgagaacac gtacaggctt tcctgcaatc atgtattcca
      781 tgaattctgc atccgaggct ggtgcatcgt gggaaagaag cagacatgtc cctactgcaa
      841 ggagaaggtg gacctgaaga ggatgttcag caatccctgg gagcggcctc atgtcatgta
      901 tggacagctg ctagactggc ttcggtactt ggtagcctgg cagcctgtta tcattggcct
      961 ggtgcaaggc atcagctaca tcctgggcct ggagtaatca gagaccacat cattgcagaa
     1021 ccaccccacc caccatggac ctcagggcac tctccttgct gcccacaaag acttgggtgg
     1081 aaaagactca aaggcacttg ggccattcag gacctcccca gctgtgtctg ggttggaggg
     1141 gacatgatgg agaaccagcc agtggggctg tcagcagtgg ggggcttttt aaaagaaaat
     1201 tattttgatg aa
//
