LOCUS       XM_039081135            4969 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ring finger protein 111 (Rnf111),
            transcript variant X7, mRNA.
ACCESSION   XM_039081135
VERSION     XM_039081135.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081135.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4969
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4969
                     /gene="Rnf111"
                     /note="ring finger protein 111; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 27
                     ESTs, 3 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 73 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:300813"
                     /db_xref="RGD:1310097"
     CDS             430..3420
                     /gene="Rnf111"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase Arkadia isoform X7"
                     /protein_id="XP_038937063.1"
                     /db_xref="GeneID:300813"
                     /db_xref="RGD:1310097"
                     /translation="MTQWTPEYNELYTLKVAMKSGTPPDAPTTQESLKAVLLHPQPLG
                     ATKSFPAEVEMINSKVGNEFSHLCDDSQKQEKDMNDNQQEQEKSGVVRKKRKSQQAGP
                     SYVQNCVKENQEILGLRQHLATPSDEDDDSSFSECLSSPSSSLHFGDSDTVTSDEDKE
                     VSVRHSQPILSAKSRSHNARSHKWPRTEAEPVPGLLMKRPCFHGSAVRRVPCRKRPVK
                     SSSSQRTQKQKERLLVQRKKLAQRKYALLASSSTSSENDLSSDSSSSSSTDGEEDLCA
                     SASENPSNPAAPSGSIDEDVVVIEASFTPQVTANEEINVTSTDSEVEIVTVGESYRSR
                     STLGHSRSHWSQGSSSHTGRAQEPRNRSRISTVIQPLRQNAAEVVDLTVDEDEPTVVP
                     TTSARMDSQTTSASINNSNPSTSEQGSDTTSTVASSQPSTVSETAATLTSNSATGSSV
                     GDDVRRTASNAVPESGPPAMPRLPSCCPQHSPCGGTSQSHHALAHPHSSCFQQHGHHF
                     QHHHHHHHTPHPAVPVSPSFSDPACPVERPQVQAPCGANSSSGSSYHDQQALPVDLSN
                     SALRTHGSGGFHGASAFDPCCPVSSSRAAVFGHQAAAAPTQPLSIDGYGSSMVAQPQP
                     QPPPQPSLSSCRHYMPPPYASLTRALHHQASACHHSHGSAPPQTQPPPQVDYVIPHPV
                     HAFHSQISTHAASHPVAPPPPTHLGSTAAPIPQHLPPAHQPISHHIPAPAPSAQRLHP
                     HEVMQRMEVQRRRLMQHPTGLFVFCVSRRAHERPPPHPHRMHPNYGHGHHIHVPQTMS
                     SHPRQAPERTAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHHLQLGALPLMVPDM
                     AGYPHIRYISSGLDGTSFRGPFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYK
                     KVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVD
                     QWLITNKKCPICRVDIEAQLPSES"
ORIGIN      
        1 cgcgctcgct ttccgaactg tcgtaaaagg cccccggtgt cgcgctcgcg cagtcgggga
       61 gggccggccc aggctgcggc ggcggcggcg atggtagcgg ggcgctgggg ctgcgcggcg
      121 tagagacgcc ggccgttcag ggtcgcgagc gcgcgtgggc cgcgatcggg tgctccgagc
      181 cgggtcgagc cgagccgggc gcagcctcac attccgcggc ggcggcgttg tcaaacgccc
      241 tcctgaggac agccacccgg cccgcctcag cgtcacccgg ccgagcgctg ttcgccagcc
      301 cgcgccagcg agtcccggac ctggccgcac ggggcctgcg gactcggata attgatcgga
      361 gtcagcagtg gtgcggtgga aatatcgggt tttgttctgg agaaatagag gccttcccta
      421 aagtttccca tgactcaatg gactcctgaa tataacgagc tctacaccct gaaagtggct
      481 atgaagagtg ggactcctcc tgatgcgccc actacacagg agagtctgaa ggcggttctt
      541 ctgcacccac agcccctagg ggccactaag agcttccctg cagaagtgga gatgatcaat
      601 agcaaagtgg ggaatgaatt ctctcatctg tgtgatgatt cccaaaaaca agaaaaggat
      661 atgaatgaca accagcaaga acaagaaaaa agtggtgttg tgagaaaaaa gcgcaaaagc
      721 cagcaggctg gcccctcata tgtgcagaat tgtgtcaaag aaaatcagga gatcctcggg
      781 ttgaggcaac acctagcgac accaagtgat gaagatgacg actcttcctt cagcgagtgt
      841 ctgtcttctc cctcatctag tctccatttt ggggactctg atactgtgac ttcagatgag
      901 gataaagaag tctcagtgag acattcccag cctattctga gtgctaaaag cagaagtcac
      961 aatgcaaggt cccacaagtg gcctcgaact gaggcagagc ctgtgccagg tttgttgatg
     1021 aaaagacctt gttttcatgg cagtgcagtg aggagagtcc catgtagaaa gaggccagtg
     1081 aagagcagct cctcacagag gacacagaag cagaaggaga ggctgctagt gcagaggaag
     1141 aagctggctc agaggaagta cgctcttctc gccagctcca gtacctccag tgagaatgac
     1201 ctcagcagtg attcctcttc cagttcctcc acagatggag aagaggacct gtgtgcatct
     1261 gccagtgaga accccagcaa ccccgctgct ccctcaggaa gtattgatga agatgttgtg
     1321 gtgatagaag cttccttcac tccccaggtc actgccaatg aagaaattaa tgttacctca
     1381 actgacagtg aagtggagat tgttacagtt ggagaaagct atcggtctcg ttcaaccctt
     1441 gggcactcca gatctcattg gagccaaggt tcaagttcac acacaggccg ggcacaggag
     1501 cctcgaaacc gcagtaggat ctctactgta atacagcccc tgaggcagaa cgcagcagaa
     1561 gttgtggacc ttactgttga tgaagatgaa cctactgtag taccaaccac ttctgctaga
     1621 atggactcac aaactactag tgcttccatt aacaattcaa atccatctac ctctgagcaa
     1681 ggctctgata ctacttcaac tgtggccagt agccagcctt ccacagtgtc agagactgca
     1741 gctactctta caagcaatag tgcaactggt tcttctgtgg gcgatgacgt gaggagaact
     1801 gcatcaaatg ctgtcccaga aagtggtcct cctgcaatgc caaggctacc ttcatgctgc
     1861 ccccagcact caccatgcgg agggacatca cagagtcacc atgcattagc acatccacac
     1921 tcaagttgtt ttcagcagca tggccaccat tttcagcatc accaccacca ccaccatact
     1981 ccccacccag ctgtcccagt ttctccttcc ttcagtgacc ctgcttgtcc tgtggaaaga
     2041 cctcaagtac aggcgccttg tggagcaaat agcagctctg gttccagcta ccacgaccag
     2101 caggcattgc cagtcgatct gagcaacagt gctctcagga ctcatggaag tgggggtttc
     2161 catggtgcat ctgcctttga cccttgctgc cctgtctctt cttcccgggc tgcagtcttt
     2221 ggccatcagg ctgctgcagc cccaactcag ccattatcaa tagatggcta tggctccagc
     2281 atggttgcac agccccagcc ccagccacct ccacagcctt ctctctcatc atgtcggcac
     2341 tacatgccac ctccttatgc ttccttgaca agagcactgc accatcaagc ctcagcttgc
     2401 catcactctc atgggagtgc tcctcctcag actcagcctc cccctcaagt ggattatgtg
     2461 attccgcatc ctgtccatgc tttccattct cagatttcta ctcacgcagc atctcaccct
     2521 gtggcgccgc cgcccccaac acatctaggc agtacagcgg cacccatccc tcagcatctt
     2581 ccacctgctc accagccaat ttcacaccat attccagccc cagcaccttc agcccagaga
     2641 ctgcaccctc atgaagtgat gcagaggatg gaagtgcaga ggaggaggct gatgcagcat
     2701 cccactggtc tttttgtgtt ctgtgtttcc aggcgggcac atgaacggcc cccaccccat
     2761 ccacatagga tgcacccaaa ctatggccat gggcatcata ttcatgtgcc tcaaaccatg
     2821 tcttcacatc ctcgccaggc tccggagaga actgcctggg aactggggat tgaagctgga
     2881 gtgactgcag ctacctacac acctggtgca ctgcaccctc acctggccca ttaccacgcc
     2941 ccgcctcgac ttcatcacct acagttagga gcacttccct taatggtccc tgacatggca
     3001 ggctatcctc acatccgtta catttcttca ggattggacg gaacatcatt cagaggtcct
     3061 ttcaggggca attttgagga attgattcat ctggaagaaa gattaggaaa tgtcaatcgt
     3121 ggagcctccc agggaacaat tgaaagatgc acatacccac ataaatacaa aaaggtaaca
     3181 actgattggt tctcacagag gaaactgcac tgcaaacaag atggggaaga agggactgag
     3241 gaagacacag aggaaaaatg tactatctgt ttgtctattt tagaggaagg tgaagatgtg
     3301 agacggcttc cgtgtatgca cctttttcac caagtgtgtg ttgatcagtg gctgatcacc
     3361 aataagaagt gccccatatg cagagtggac atcgaggccc agctgccaag cgaaagttga
     3421 cattgtgttt cagaactctt gctgtccctc tcattcccat ccttcctggt actgcagtca
     3481 accaaagatg gcatgactta cctgcgcagg tctggaagcc ttgatcttga agtgctgact
     3541 ctgctacatg gtacagctac cgctagacct acaacttatg tacacagttg atttcgatgt
     3601 atttataaaa gcttttgtgt ttttttctag atttgacatt acttcctgta tcattttact
     3661 gtatttttgc atgattcctt gtattgcatt tctttgcaca tattatgggc ttgtgaccct
     3721 aaacttgcag gcaagattag ctgctttagt aagtagtatt ttgtggtctt tttggttttg
     3781 ttttgttttg ttttttgttt tttgtttttt ttttttttac atagtacctt gaaaattatg
     3841 aatttgtttt tatccattac taacctttaa tttaatcaat catgtacttt agtttaatgt
     3901 ataaagatcc tctaggaaat gataatattg tgtattaaga cattccttca ttaaattagg
     3961 acaaaatggc tgctgtatat ttacaatatg gagttctgag ttaagtacca cccttaatac
     4021 tgggaacaga atgtaacccg tgtcaatcag atgcaggtgg tactcacgac cagagtgatc
     4081 aataggaatc ttcttggtgt atcctttctt ccagcacagt gcaagataga gttgctgttg
     4141 atgccgtatg tttagactgc tgttctgacc ctatttatct ctgccatttg gaactttatc
     4201 cctaacccag gttttgctgc tgtgaaacag cgttgatgaa cactaaatat taatttgaga
     4261 tagctggatt gtatatactt gcagatttaa aaaaataggg aaattgaaaa agacatgtag
     4321 aattttgtta ggtcttctgc taagcacgaa taagatatct gcttacatta attttataaa
     4381 gtcattcagt cagaatttag gattcagtca ttggcaggta tctatgcatt cgtagaactt
     4441 ctaagggtcc caggatcact tttaagggat ttttttttat agtttaaata aagtcagctg
     4501 aatctacatg tctcttgttt tatttctctc taaacttgaa aacaataaat ctgcagatac
     4561 tgtgaggcac agattatatt gtcaagctac tgttgctatg gttatagaca cccacttcag
     4621 acattaccaa gagtcgatca ctgacttaaa aattttaatt tctatagtta agatttacaa
     4681 cataatatag agtaaaagtt aacatactaa catttctcct ttggaggaag ttttaatcca
     4741 cttcaggatg catattatca agatactttc atatacagga tagtctaatt ttatttgttt
     4801 aaatatgctt aatatgccca agattgcaaa tgcatccagt cagtaatacc actgtctgta
     4861 tgtggaagac atgttcccat ggatcatatg tgaagatgtc aataagcttg cattaagcca
     4921 cctgctttgt aagtggattg attaataaat aacttatatt tctattgtc
//
