LOCUS       NM_001271224            1186 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus ring finger protein 11 (Rnf11), mRNA.
ACCESSION   NM_001271224 XM_002726577 XM_003749996
VERSION     NM_001271224.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1186)
  AUTHORS   Murakawa M, Asahina Y, Kawai-Kitahata F, Nakagawa M, Nitta S, Otani
            S, Nagata H, Kaneko S, Asano Y, Tsunoda T, Miyoshi M, Itsui Y,
            Azuma S, Kakinuma S, Tanaka Y, Iijima S, Tsuchiya K, Izumi N, Tohda
            S and Watanabe M.
  TITLE     Hepatic IFNL4 expression is associated with non-response to
            interferon-based therapy through the regulation of basal
            interferon-stimulated gene expression in chronic hepatitis C
            patients
  JOURNAL   J Med Virol 89 (7), 1241-1247 (2017)
   PUBMED   28036111
REFERENCE   2  (bases 1 to 1186)
  AUTHORS   Lee YI, Giovinazzo D, Kang HC, Lee Y, Jeong JS, Doulias PT, Xie Z,
            Hu J, Ghasemi M, Ischiropoulos H, Qian J, Zhu H, Blackshaw S,
            Dawson VL and Dawson TM.
  TITLE     Protein microarray characterization of the S-nitrosoproteome
  JOURNAL   Mol Cell Proteomics 13 (1), 63-72 (2014)
   PUBMED   24105792
REFERENCE   3  (bases 1 to 1186)
  AUTHORS   Pranski EL, Dalal NV, Sanford CV, Herskowitz JH, Gearing M, Lazo C,
            Miller GW, Lah JJ, Levey AI and Betarbet RS.
  TITLE     RING finger protein 11 (RNF11) modulates susceptibility to
            6-OHDA-induced nigral degeneration and behavioral deficits through
            NF-kappaB signaling in dopaminergic cells
  JOURNAL   Neurobiol Dis 54, 264-279 (2013)
   PUBMED   23318928
  REMARK    GeneRIF: our findings demonstrate that RNF11 in neurons can
            modulate susceptibility to 6-OHDA toxicity through NF-kappaB
            mediated responses
REFERENCE   4  (bases 1 to 1186)
  AUTHORS   Chen J and Chen ZJ.
  TITLE     Regulation of NF-kappaB by ubiquitination
  JOURNAL   Curr Opin Immunol 25 (1), 4-12 (2013)
   PUBMED   23312890
  REMARK    Review article
REFERENCE   5  (bases 1 to 1186)
  AUTHORS   Harhaj EW and Dixit VM.
  TITLE     Deubiquitinases in the regulation of NF-kappaB signaling
  JOURNAL   Cell Res 21 (1), 22-39 (2011)
   PUBMED   21119682
  REMARK    Review article
REFERENCE   6  (bases 1 to 1186)
  AUTHORS   Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta
            R, Wang NS and Knepper MA.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   7  (bases 1 to 1186)
  AUTHORS   Li H and Seth A.
  TITLE     An RNF11: Smurf2 complex mediates ubiquitination of the AMSH
            protein
  JOURNAL   Oncogene 23 (10), 1801-1808 (2004)
   PUBMED   14755250
REFERENCE   8  (bases 1 to 1186)
  AUTHORS   Jolliffe CN, Harvey KF, Haines BP, Parasivam G and Kumar S.
  TITLE     Identification of multiple proteins expressed in murine embryos as
            binding partners for the WW domains of the ubiquitin-protein ligase
            Nedd4
  JOURNAL   Biochem J 351 Pt 3 (Pt 3), 557-565 (2000)
   PUBMED   11042109
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC088292.1.
            
            [WARNING] On Jul 10, 2024 this sequence was replaced by
            NM_001271224.2.
            
            On or before Sep 9, 2012 this sequence version replaced
            XM_002726577.2, XM_003749996.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088292.1, FN798819.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132308, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-524               BC088292.1         1-524
            525-1186            BC088292.1         526-1187
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..1186
                     /gene="Rnf11"
                     /gene_synonym="Rnf11l1"
                     /note="ring finger protein 11"
                     /db_xref="GeneID:100364162"
                     /db_xref="RGD:2321596"
     exon            1..363
                     /gene="Rnf11"
                     /gene_synonym="Rnf11l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             241..705
                     /gene="Rnf11"
                     /gene_synonym="Rnf11l1"
                     /note="ring finger protein 1; ring finger protein 11-like
                     1"
                     /codon_start=1
                     /product="RING finger protein 11"
                     /protein_id="NP_001258153.1"
                     /db_xref="GeneID:100364162"
                     /db_xref="RGD:2321596"
                     /translation="MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQV
                     PVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVIC
                     MMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN"
     exon            364..533
                     /gene="Rnf11"
                     /gene_synonym="Rnf11l1"
                     /inference="alignment:Splign:2.1.0"
     exon            534..1155
                     /gene="Rnf11"
                     /gene_synonym="Rnf11l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccctcaggtt ccagacacga ccccggcgca gcccgcggcc tagcctcgcg ccccctgccc
       61 cgggggctgg catgagcggc ccctcggtgg cgccggggcg cgggggagcc gccgcctgag
      121 ccccgggcct gccgccttgg accccgcggc gccgagcgag ctgaccgccg tgtgtgcggg
      181 agaccgggtc acagctttct tcctccctca gatctcaagc atacacccca gccccggaag
      241 atggggaatt gcctcaaatc cccgacttcg gatgacatct ccctgcttca cgagtctcag
      301 tccgaccggg ctagctttgg cgaggggacg gagccagatc aggagccgcc gccgccatat
      361 caggaacaag ttcctgttcc cgtctatcat ccgacaccta gccagactcg gctagcaact
      421 cagctgactg aagaggaaca gattagaata gctcagcgaa taggccttat acagcatctg
      481 cctaaaggag tgtatgaccc tggaagagat ggatcagaaa aaaagatccg agaatgtgtg
      541 atctgtatga tggactttgt ctatggggac ccaattcgat ttctgccgtg catgcacatc
      601 tatcacctgg actgtataga tgactggttg atgagatcct tcacgtgccc ctcctgcatg
      661 gagccagttg acgcagccct gctttcatcc tatgagacta attgagccag ggggtctcgt
      721 ctgacttcaa gtgaaccatc agctttggtg gttttgatct tttgtcactg agcccaaaga
      781 gccagggatt aggaattaag atcatgcaca aaagtttcct acagattcct ggatggctgc
      841 agatgttgag gaaagtatgt gatattttag aaacttaggg ggaaagtagg atggatggta
      901 tttttatgta aagccttgac ccagtgttta aaatataatt gtcatcagac cttgttcttg
      961 ctccagtaca taggaattgt gtaaagtgtt acagcaactg tacatgttta aatcgtgtgt
     1021 gttgaagctt aggaaaaaga tatagttgtt atttttccta aatgaaataa gtttcttctc
     1081 ccacccaaat tcttttctga aaagttactg acatttgggt caaggtttta ttaaaagcta
     1141 cattttataa cactgaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//
