LOCUS       XM_039108706            5118 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus required for meiotic nuclear division
            5 homolog A (Rmnd5a), mRNA.
ACCESSION   XM_039108706
VERSION     XM_039108706.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 16, 2024 this sequence was replaced by
            NM_001427218.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5118
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5118
                     /gene="Rmnd5a"
                     /note="required for meiotic nuclear division 5 homolog A;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 80 ESTs, 2 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 126 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:312439"
                     /db_xref="RGD:1309766"
     CDS             492..1667
                     /gene="Rmnd5a"
                     /codon_start=1
                     /product="E3 ubiquitin-protein transferase RMND5A"
                     /protein_id="XP_038964634.1"
                     /db_xref="GeneID:312439"
                     /db_xref="RGD:1309766"
                     /translation="MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEIL
                     QSHGQDAELSGTLSLVLTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDIS
                     SVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRI
                     LEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAK
                     NFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGL
                     SVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIF
                     ACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF"
ORIGIN      
        1 acgccggctc ttcctccgcc cgcgctggcc cgctgcttac cccgaccccg cgtcgagtcc
       61 gcgcttggta cggcccgcgc cacctcctcc gctcgtgagg gaggctcgac cccctcccgg
      121 gccgcggctc ttggtgccgc ccgggagaac caggtcatcg gccggttccc gtgaaaacaa
      181 aaacaatcgg cggcgccgcc ggggggcggc cgaacgcggc gagacagggg gcccggggcg
      241 agacgcggcg ccgggtaggg cgggcgagcg agcgagcgcg agcggcgggg ccggggcgcc
      301 atggggcggg cgggcatggg ctgcgcgggg ctctccgggt gccgcggcta gcgcgcccgc
      361 cttgccttcg tctcccgcgc tgcccgcctg ccgccttggg ggaggaggag caggacgcgg
      421 cctcggtggg gcccgggccg aaccactgcg gacccctggg cgccggggag ccaagcgccg
      481 cggtctccgg catggatcag tgcgtgacgg tggagcgcga gctggagaag gtgctgcaca
      541 agttctcggg ctacgggcag ctgtgcgagc ggggcctgga agagctcatc gactacaccg
      601 gcggcctcaa gcacgagatc ctgcagagcc acggtcaaga tgccgagtta tcagggacac
      661 tttcacttgt tctgacacag tgctgcaaaa gaataaagga cactgtccag aagttggcct
      721 ctgaccacaa agacatccac agcagtgttt ctcgagttgg aaaagccatt gataagaatt
      781 ttgactctga cattagcagt gtgggaatag atggctgctg gcaggcagac agccagcggc
      841 ttctcaatga agtcatggtg gaacacttct tccgacaagg aatgctggac gtggccgagg
      901 agctctgcca ggagtctggt ctgtctgtgg acccaagtca gaaagaacca tttgtggaat
      961 taaatcgaat attagaagca ttaaaagtca gagttctaag gcctgctctt gagtgggcag
     1021 tatcaaaccg agaaatgctc atagcccaaa acagctcctt ggaatttaaa ctacaccgac
     1081 tgtattttat tagcttgtta atgggtggaa ctacaaatca gcgagaagcc ttacaatatg
     1141 cgaaaaattt ccagccgttt gctctaaatc atcaaaagga cattcaggta ttgatgggaa
     1201 gccttgtgta cctgagacaa gggattgaaa actcaccata tgttcaccta cttgatgcaa
     1261 accagtgggc tgacatctgt gacatcttta cacgggatgc ttgtgccctc ctagggctct
     1321 ccgtggagtc tcctctcagc gtcagtttct cagcaggttg tgtggcgctg cctgcactaa
     1381 ttaacatcaa agctgtgatt gaacagaggc agtgtactgg agtttggaac cagaaagacg
     1441 aattacctat tgaagtggac cttggtaaaa agtgctggta tcattccata tttgcctgtc
     1501 ccattcttcg tcagcaaaca acagataaca acccacccat gaaattggtt tgtggtcata
     1561 ttatatcaag agatgccctg aataaaatgt ttaatggtag caaattaaag tgtccatatt
     1621 gcccaatgga acagagtcca ggagatgcca aacagatatt tttctgaaga atgagtttgt
     1681 ttgcaatttt gtctcatctc attgactgtg aacctgtata ttgctcaaat ggctacagat
     1741 aatgatcttt tcttttgtga ggtctcttca tttaatgcac tgcccataaa gagccatgtg
     1801 taagagttat tctctgtatg aggaactaat tacatggaaa agacttctgt ggacataatt
     1861 ctgacttaaa cccatgaaat acttcatctt gagaagagtg ctgtgtggaa atcaccaaat
     1921 aactcacaac cttatttcat ctgatgtaga tctgaacacc aacatatgaa aactgtcata
     1981 agaaaatgaa aaaccataaa cacagaagca acaagaaatg agactcttat tttaaactac
     2041 gatggactct gtttaaggga atggggataa cagctttggt gctaagttaa tcagaaattt
     2101 ccagcattca cagtggtatg ctagcctgga tggtctctcc tgaaatgttt gcctaggaga
     2161 gctggtattt gcttgtgaaa gaaggaagaa gtattgcaga aaaacccaag aaatgaccac
     2221 atggtcagtt tcatggtgat ggctattgtg tactgtgtag gttacctggg tcaagattgg
     2281 tccagcttag agtgcatgct ttgttcaaac ccaagcctgg ctcacaatga cttgtgcatc
     2341 actcactgtc aggatgctct gtaaagtccc tcaggcccca tgaagcaggg aaagaacaga
     2401 ggtgcctcta gcctgcaaga gaaagggcca ggcaagatcc tgtggaggga gggaggcagg
     2461 atgtgaactc gtttactatg ggtatttttt cctttgaatt aaattctaga gtgtcaggct
     2521 ttttttttta actttgttat tcctaagcca aatttagttt ttaggtttcc ttctcctccc
     2581 atccccccaa taacttattc ttatcttccc acctcaagca tctacatgac atttagactt
     2641 cacatgaagt ttatgtgata cacacatgct cttgaggttg gtggaaagtg gttttggaag
     2701 taagaccctt cacacaattg gctcaggcca ttttaaggac gagggctctg cctggtcctc
     2761 ctggtgccgg gcatctcttt gacagtctct tgtgaagctc atgaaacttt aaaaagaatg
     2821 agctttaaca agtgtttgac cctacagctt cctctgtaag gccttatagt cccagtgggc
     2881 gggcaggaca aaggcccaaa actgaaactt gatcttaaaa tttaccatgg aaaggaggtc
     2941 ttaggctctt ctttaaatgt gtgtgcttta tctgtaagag actgactagc agaagtggat
     3001 tcaaagaaga cagaccttga ccaaagatgc tgaagtacaa tattggggtc cttgtactct
     3061 agacccatgc catcacggtg tcatgctcaa gcttgcatgc aggaggatgc cttgttagaa
     3121 aacgtgatgt tagcggaaga ctgtcggtca cacagatgac aggcattgga aacagccacg
     3181 ccatggcttc tttgagagct gcttcctttt tctggttgtg gacaaggctg ccttaggact
     3241 ctgctaaacc aacaaaacct ttagaatctg gtggagccag agcctctcca cagtggctaa
     3301 agttgtcatt gatcttttct cttctccttt gtgtgatcat cacagatgcc atttctgttt
     3361 tattgatgat tatatgagac ttttaataca taaatgaacg ggtattggtg cctctttatt
     3421 tttaaaagtt tgaagaaaaa gagccacctc atattcatag agtgtgtatt ttgtgagtat
     3481 gtaagcattt gattgaaaat aagaaagtta ttaagtaaaa ttttcgtttt actctttcca
     3541 caacagctaa tgtgtaggga tacattaaac ccacaccaaa tcatgagggg atgagaatcc
     3601 ccccaatctt cttctctagg tcgcccatcc cacaggctgt gcagctcaga ttcctgttta
     3661 tgctgtgttg tgtccacctc agtgctgtca gcctttggga cagtggctct caaagccaag
     3721 agctcttggt ttgtctgccc agtagaagct gctggtagac tacactagtc ctctggtttc
     3781 ccagcacaac cctcatgcag tggactgaca gcctgtgttg tctgtttcgt cagccaactc
     3841 aggttatctt cagggaaggt atggaggtgt ggtttgtttt ggtttatctc caggatgtat
     3901 acggtgaaga caaaccaaat acttttcacc attgaactat ctgtatatta tctttggtaa
     3961 cactagaata ctgtggtctt ggggaacaca cagaggaaac atagcaagaa tcacatacaa
     4021 ggcttggtgt ttgataagcg tgccagctga cagttgtgtg tgctactgtg tgtacacgtg
     4081 tttaccatga acaggtacag gcttcatgat tttcatactg aattacaatt gagtagatac
     4141 caaaaacagt ggcaaatgta ttttagtaac agatgaagca attagtttta gggtgaattt
     4201 ttcactgttg attttacttt aagatgtagc aagagaaagt tttgttttta aggcatttta
     4261 aagctgtagc aggcatatgc ttcatttaat tccaaagagg caaaagcggc tagactcgca
     4321 cgcacacagc acatgctccg ctccatggca tggctggaca cctacacttc taagcagtct
     4381 taaactactc acagccaggc aggtgggggt ctgcgggatt tagtgcctga cattgctttt
     4441 gggaaggggc tggagtgaat gtactgggta tgggagggaa gcagaaggaa acaggactgt
     4501 gagtgagtgt gcatgtgtgg aaattcatca taacccttga agctagcaag cgactgctgt
     4561 tggccgtgct ttcctcatgc ctgcagtgtg catgtatctc ctcaccatgt tttctagcct
     4621 tcactaagga ttcgtcagat cttcatcttg ctcagatggc tcaggatcgt gttcctttgg
     4681 cttacccacc cgtgctcctg ggttctatgg tgttcctata attatgaata gtgctgcact
     4741 gtaatctatc atatagagct atatgtatgg aaatttttga tcagtttttt aagagatgta
     4801 tcctgtttgc aaaggcacaa taaaattgca tcttctagat tataggcaat aaagataaca
     4861 ataaacctta tttaacaaat cagactgata ctctgcttat ttgatttggt ggggaggagg
     4921 atgtctaaca tattcagtag tttcagggat ttcactttaa cttaaaaact gatatttaat
     4981 ttataaattt gggactgata aagtagagtt ttgggaaact ataagaaatg ctttgttaat
     5041 gtgtgtattc ctatgtaaaa cacatggctt cttctgtgta tattttttaa aattaaagac
     5101 tcgcacattt aaaacgtg
//
