LOCUS       NM_001009638            2145 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus regulator of MON1-CCZ1 (Rmc1), mRNA.
ACCESSION   NM_001009638 XM_214622
VERSION     NM_001009638.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Vaites LP, Paulo JA, Huttlin EL and Harper JW.
  TITLE     Systematic Analysis of Human Cells Lacking ATG8 Proteins Uncovers
            Roles for GABARAPs and the CCZ1/MON1 Regulator C18orf8/RMC1 in
            Macroautophagic and Selective Autophagic Flux
  JOURNAL   Mol Cell Biol 38 (1), e00392-17 (2017)
   PUBMED   29038162
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Schroder B, Wrocklage C, Pan C, Jager R, Kosters B, Schafer H,
            Elsasser HP, Mann M and Hasilik A.
  TITLE     Integral and associated lysosomal membrane proteins
  JOURNAL   Traffic 8 (12), 1676-1686 (2007)
   PUBMED   17897319
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087672.1.
            
            On Jan 13, 2005 this sequence version replaced XM_214622.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087672.1, SRR8487227.324406.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p13"
     gene            1..2145
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /note="regulator of MON1-CCZ1"
                     /db_xref="GeneID:291784"
                     /db_xref="RGD:1311805"
     exon            1..178
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..2050
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /note="uncharacterized protein C18orf8 homolog; WD repeat
                     domain 98"
                     /codon_start=1
                     /product="regulator of MON1-CCZ1 complex"
                     /protein_id="NP_001009638.1"
                     /db_xref="GeneID:291784"
                     /db_xref="RGD:1311805"
                     /translation="MGSEDYYLELCERPVQFEKANPVNCVFFDEANKQVFAVRSGGAT
                     GVVVKGPDDRNPISFRMDDRGEVKCIKFSLENKILAVQRTSKAVDFCNFIPDNSQLEY
                     TQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKSHNINVNWHMYC
                     PESSVILLSTTVLENVLQPFYFKAGTMSKLPKFEIELPAAPKSTKLSLSERDIAMATI
                     YGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVV
                     VHHQDTETSVIFDIRLRGEFDGTVTFHHPVLPARSIQPYQIPLAGPAAVTNQSPVPCK
                     LYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRKECKAVVLS
                     VCSQMLSESDRATLPVIATVFDKLNHEYKKYLDAEQSYTMAVEAGQSRSNPPLKRPVR
                     TQAVVDQSDVYTHVLSPFVENKETPPKFVIAVLMEYIRSLNQFQIPVQHYLHELVIKT
                     LVQHNLFYMLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIV
                     EVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTDDVMLFYTIFRFFEQRNQRLR
                     GNPNFTPGEHCEEHVAFFKQAFGEQALMRPTTF"
     exon            179..255
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            256..340
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            341..397
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            398..484
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            485..625
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            626..729
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            730..819
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            820..925
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            926..1037
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1082
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1136
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1137..1265
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1372
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1492
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1493..1570
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1571..1675
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1744
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1745..1970
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
     exon            1971..2125
                     /gene="Rmc1"
                     /gene_synonym="C18orf8; RGD1311805; Wdr98"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcctagggc tgcggcccag cggcgacccg gttcttggac tgcatcttct acggacgagc
       61 tccgccggtc ccagccatgg gcagcgagga ctactacctg gagctgtgcg agcggccagt
      121 gcagttcgag aaggcgaacc cggttaactg cgtgttcttc gacgaggcca acaagcaggt
      181 ttttgctgtt cggtcaggtg gagctacagg agtggtcgtt aaaggtccag atgataggaa
      241 tcccatctct tttagaatgg acgacagagg agaagtgaag tgcattaagt tttctctaga
      301 aaataagata ctggctgtcc agaggacttc gaaggccgtg gacttttgta attttattcc
      361 agataactct caactggagt acacacaaga gtgcaagacc aagaatgcca acatactagg
      421 attctgctgg accagttcta ccgaaattgt cttcataacg gatcaaggca tcgaatttta
      481 ccaggtgttg cctgagaagc gaagcctcaa actcctgaag agccacaaca tcaatgtgaa
      541 ctggcacatg tactgtcccg agagctcggt gatcctgctg tccacgacag tccttgagaa
      601 tgtcctgcag cctttttact ttaaggctgg caccatgtcg aagcttccca agtttgagat
      661 tgagttacca gctgcaccga agtcaactaa acttagcctc tcagaacgag acattgcgat
      721 ggcgaccata tacgggcagc tctacgtcct cttcctgcgg catcattccc ggacctccaa
      781 tagcacagga gcggaggtgg tgctgtacca tctcccacga gagggtgcgt gtaagaagat
      841 gcacatactg aagttgaata ggacgggaaa gtttgctcta aatgtagtgg acaacctggt
      901 agttgtccac catcaggaca cagagacgtc agtgatattt gacatcaggt tacggggaga
      961 gttcgacggc acagtcacct tccatcatcc tgtgcttcca gcgagatcaa ttcagcctta
     1021 ccagatcccc ttggcaggtc ctgctgctgt aaccaaccag tctcccgtcc cctgtaaact
     1081 ctattcctcc tcgtggatcg tcttccaacc agacatcatc atcagtgcaa gccaaggtta
     1141 cctctggaac ctgcaggtga aacttcagcc catagtgaat ctcttgccag ataaaggaag
     1201 actgatggac tttctcctcc agaggaagga gtgtaaagcc gtcgttctgt ctgtctgttc
     1261 acagatgctg agtgagtcag acagagccac gctgcctgtg atagccactg ttttcgataa
     1321 actcaaccat gagtacaaga agtacttgga tgctgaacag agctacacaa tggcagtaga
     1381 agcagggcaa agccggagca acccacctct caaaaggcca gtgaggaccc aagccgtggt
     1441 agaccagtct gatgtgtaca cacacgtgct gtcaccattt gtggaaaaca aggagacgcc
     1501 acccaagttt gtgatagctg tgctgatgga atacatccgt tctctgaacc agtttcagat
     1561 cccagtgcag cattacttac acgaacttgt catcaagaca cttgtccagc acaacctatt
     1621 ttacatgctc caccagtttc tgcagtacca tgtgctcagc gactccaagc ctctggcttg
     1681 cttgttgctg tccctagaaa gcttttatcc tcccgcccac cagctgtctc tggacatgtt
     1741 gaagagactt tcaacagcaa atgatgagat cgtagaagtg cttctgtcta agcaccaggt
     1801 gctggctgcc ctaaggttca tccggggtat tggcggccat gacaacattt ccgcacgaaa
     1861 attcttagat gctgctaagc agactgatga tgtcatgctc ttctatacca tattccgctt
     1921 ctttgaacag cgaaaccagc gtttgcgagg gaaccctaac ttcacaccag gagaacactg
     1981 tgaggaacac gtagcctttt tcaagcaggc ttttggagaa caagctctaa tgaggcctac
     2041 aacattctga agtccctcaa cggttttaat ataaaaatgt acaaagttaa tttattgcat
     2101 taataaagct ctttaaacta caaaaaaaaa aaaaaaaaaa aaaaa
//
