LOCUS       XM_233485               6246 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RLF zinc finger (Rlf), mRNA.
ACCESSION   XM_233485
VERSION     XM_233485.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 24, 2024 this sequence was replaced by
            NM_001427447.1.
            
            On Jan 21, 2021 this sequence version replaced XM_233485.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6246
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6246
                     /gene="Rlf"
                     /note="RLF zinc finger; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 22 ESTs, 1 long SRA read,
                     2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 135 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:313566"
                     /db_xref="RGD:1305297"
     CDS             34..5793
                     /gene="Rlf"
                     /codon_start=1
                     /product="zinc finger protein Rlf"
                     /protein_id="XP_233485.6"
                     /db_xref="GeneID:313566"
                     /db_xref="RGD:1305297"
                     /translation="MADGKGDATAAAGAGAGAEAAAAAGAGTETESMARGHRPASPAS
                     GAPGLRPCLWQLETELREQEVSEVSSLNYCRSFCQTLLQYASNKNASEHIVYLLEVYR
                     LAIQSFASARPFLTTECEDVLLVLGRLVLSCFELLLSVSESELPCEVWVPFLQSLQES
                     HDALLEFGNNNLQILVHVTKEGVWKNPVLLKILSQQPVETEEVNKLIAQEGPSFLQMR
                     IKHLLKSNCIPQATALSKLCAESKELAQVSCFQQAYVTCLCSMLPSEEAIQEIAKVDC
                     KEVLDIICNLESEGQDNTAFVLCTTYLTQQLQTASVYCSWELTLFWSKLQRRTDPSLE
                     TFLERCRQFGVIAKTQQHLFCLIRVIQTEAQDAGIGVSILLCVRALQLRSSEDEEMKA
                     SVCKTISCLLPEDLEVRRACQLTEFLIEPSLDGFNMLEELYLQPDQKFDEENAPVPNS
                     LRCELLLALKAHWPFDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLE
                     SFLSDYDEGKEDKQYRRSLADQNKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEA
                     RILHHSKMHMEDGVYTCPVCIKKFKRKELFVPHVMEHVKMPPSRSHRSRKKLLLKSSQ
                     SGIYPKSPTGSLEQNPSLSEQARGESHEYVTFSKLEDRRLQDRDLYPCPGTDCSRVFK
                     QFKYLSVHLKAEHQNNDENAKHYLDMKNRREKCTYCRRHFMSAFHLREHEQVHCGPQP
                     YMCVSIDCYARFGSVNELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDA
                     SYTCNVLGCKKFYYSKIEYQNHLSMHNVENPDGELKKSVKLEEPVAGEKQDCVDQSHL
                     LEQTDKSHSPEDLLFCPGSASAHIDTTETLKDNSDSNSSDQLSPSSSTSITEELIDSL
                     DHSETMQDLLLSDEKVFVPSSLKEKCSNVAVCFDGTKFTCGFDGCGSTYKNARGMQKH
                     LRKVHPYHCKPRKIKTKDLFTCLDDKHNEADKFDAEPKPSSDTNSDSLDEGPDHSIHA
                     KCKREHQGYSPEPSICASKRPCTEDTMLELLLRLKHLSLKNSIAHGSFSGSLQGCPSS
                     GAKSLQSVPSSISDLNLQNQDENMPSQYLAQLAAKPFFCELQGCKYEFVTREALLMHY
                     LKKHNYSKEKVLQLTMFQHRYSPFRCHICQRSFTRKTHLRIHYKNKHQIGSDRATHRL
                     LDSEKCDHEGPCSVDRLTGDCSAELGPNSSSETTQCHSKKDECSSETDLESSCEETES
                     KMCGISSPTGSHREEGEGKEGRGSRRTVAKGNLCYILNKYHKPFHCIHKTCNSSFTNL
                     KGLIRHYRTVHQYNKEQLCLEKDKARTKRELVKCKKLFACKYKDCNKRFLCSKALAKH
                     CSDSHNLDHIEESKVLSETESAARFSCNQPQCPAVFYSFSKLKHHLLEQHNIEGEIHS
                     DYEIHCTLNGCGQIFSHRSNYFQHVYYRHKDYYDNLFSSQKVANERLLRSEKVCQTTQ
                     AQGLTQGQGQTQTQGQEQQAAKRPFNTKAKKCGLLKDKKAPISFKTRAEAIHMCVEHS
                     EHTQYPCMVQGCLSVVKLESSIVRHYKRTHQMNSAYLEQQLENLVVCVKYGTKIKDEP
                     PSEVEPCVKKEENASCESVRTESQSPGDSSVPLPNTDSTCPAEQDGGQKGCSERNPVF
                     DTHSLLYRGTLKCNHSSETTSLEQCNIVQSPPCKIESPVANPSGTESGTYFTDFQLPL
                     PRIKEEPGQHSSGQENTVKNATQVPKENIRKHSQPRSFDLKTYKPMGFESSFLKFIQE
                     SEEKDDDFDDWEPSEHLTLNNSSQPGNDLTGNVVADTIVNDSDPQVDIPHSSSDPAVP
                     ENLTAIPPLVVAEATAVPSLENLRVVLDKALTDCGELALKQLHYLRPVVVLERSKFST
                     PILDLFPTKKTDELCVGSS"
ORIGIN      
        1 ttggttgcct acgcgctgct gggccgtggg aagatggcgg acggaaaggg agacgccacc
       61 gccgccgccg gggctggggc cggggctgag gctgcggcgg ccgcgggagc cggaaccgag
      121 actgagtcca tggctcgggg tcatcgccct gcatctccgg cgtcgggagc cccgggccta
      181 cgaccgtgtc tctggcagct ggagaccgag ctgagggagc aggaggtgtc cgaggtctca
      241 tctttgaact actgccggag cttctgccag accttattgc agtatgcaag caacaagaat
      301 gcatcagaac acattgtgta tcttctggag gtataccgcc ttgctatcca gagctttgcc
      361 agcgcacgtc catttttaac tactgaatgt gaagatgtcc tcttagtgct tggcagatta
      421 gtcctgagtt gttttgaatt actgctttca gtgtctgaaa gtgaactgcc ctgtgaagtc
      481 tgggtaccat tccttcagtc tttacaggag tcccatgatg cattgttgga gtttggaaat
      541 aataatttac aaatactggt tcatgttaca aaagaaggag tatggaaaaa tcctgttctt
      601 cttaaaattc tgtcacaaca gccagtagag acagaggaag ttaacaaatt gattgcacaa
      661 gaaggacctt cctttctaca aatgagaatc aaacatttgt tgaagtctaa ctgcatcccc
      721 caagccactg ctctatcaaa actgtgcgca gagtctaaag aacttgcgca ggtatcatgt
      781 tttcagcaag cctatgtcac gtgcttgtgc tccatgcttc ccagcgaaga ggctattcag
      841 gagattgcaa aggtggactg caaggaagta ctagacatca tatgtaatct ggagtctgag
      901 ggtcaggaca acacggcgtt tgttctttgc acgacttacc ttacccagca gctgcagacg
      961 gccagtgtgt attgttcttg ggagctgact ctcttttgga gtaaactgca aagaagaacc
     1021 gacccatctt tggagacatt tttggagcgc tgtcggcagt ttggtgtcat agctaaaaca
     1081 cagcagcatc tattctgcct gattagagtc atacagactg aagcacaaga tgctggcatt
     1141 ggggtgtcaa ttttattatg tgtcagagct cttcaactca gatcaagtga agatgaggaa
     1201 atgaaagctt cagtttgtaa aacaatttcc tgtcttttac cagaagattt ggaagtcaga
     1261 cgagcctgtc agcttacaga attcttaatt gaacccagtt tggatgggtt caatatgctg
     1321 gaagaactgt atttgcagcc agatcaaaaa ttcgatgaag aaaatgcacc agttccaaat
     1381 tccctgcgat gtgagctctt actggcttta aaggcccact ggccatttga tcctgaattt
     1441 tgggactgga aaactttgaa gcgacactgc caccaactac tgggacaaga agcctcagat
     1501 tctgatgatg acctaagtgg ctacgaaatg tctattaatg atacagatgt cttagagtca
     1561 tttctcagtg actatgacga aggtaaagaa gataaacaat atagaagaag tctagcagat
     1621 cagaataagg agaaaagaga caaaaagccc attggttcct ctgaaagata ccagaggtgg
     1681 cttcagtata agtttttctg tttgctgtgt aagcgggaat gcatagaggc caggattctg
     1741 catcattcca agatgcacat ggaagatgga gtctatacct gtccagtttg tattaaaaaa
     1801 ttcaagagaa aagagctatt tgttcctcac gtaatggaac atgttaaaat gccaccaagc
     1861 agaagtcacc gttctagaaa gaaattactg ttgaaaagct ctcaaagtgg tatttatccc
     1921 aagagtccta ctggaagtct ggaacaaaat ccatcattga gtgaacaagc cagaggagag
     1981 tctcatgaat atgtcacatt tagcaagtta gaagaccgcc gcctgcaaga cagagacctg
     2041 tacccgtgtc ccggtacaga ctgttcccgt gtgttcaaac agtttaaata cttaagcgta
     2101 catcttaaag ctgagcacca aaataatgat gaaaatgcca agcactactt ggatatgaaa
     2161 aatagaagag agaagtgtac ttattgccga aggcatttca tgtcagcttt tcacctgcga
     2221 gagcatgagc aggtacattg tggtcctcaa ccttatatgt gtgtctctat agattgctat
     2281 gcaaggtttg ggtcagtgaa tgaactgctt aaccacaagc agaagcatga tgacctccgt
     2341 tacaaatgtg agttgaatgg ctgcaatatt gtgttcagtg acttgggtca gctttaccac
     2401 catgaagcac aacacttcag ggatgcgtcg tacacatgca atgtccttgg ctgtaaaaag
     2461 ttctattatt ctaaaattga ataccagaat cacctttcca tgcataatgt tgaaaatcca
     2521 gatggagaat taaagaaatc agtgaaactt gaggaacctg tagcaggtga gaagcaagat
     2581 tgtgtggacc agtcccatct acttgagcaa actgataagt cccattctcc tgaagatctt
     2641 cttttctgtc cagggtcagc tagtgctcac atagacacca cagaaactct gaaggacaac
     2701 agtgatagca attctagtga tcagttaagt cccagctctt ccacttcaat aactgaggag
     2761 ttaattgact cactagacca ctctgaaacc atgcaggacc tattactgtc tgatgagaaa
     2821 gtctttgttc cctccagttt aaaagagaag tgctccaatg tggctgtttg ttttgatggg
     2881 actaaattca catgtggttt tgacggctgt ggctccacct acaaaaatgc aagagggatg
     2941 cagaaacatc tgcggaaggt gcatccgtac cactgcaagc ccagaaagat aaagacaaaa
     3001 gacctcttta cctgcttgga tgacaaacat aatgaagctg acaagtttga tgcagaaccc
     3061 aaacccagct ctgatacaaa cagtgactcc ctggatgaag gtccagatca cagtatccac
     3121 gctaaatgca aacgagaaca tcaaggctat tccccagaac cttccatttg tgcttctaaa
     3181 aggccatgta cagaggatac aatgttggaa cttctgttac gtttgaaaca tttaagcttg
     3241 aagaactcaa tagcacatgg ctctttctca gggtcattgc aggggtgccc atctagtggt
     3301 gctaagtctc ttcagtcagt cccatcttcc atttcagacc ttaatcttca gaatcaggat
     3361 gaaaatatgc caagtcagta ccttgcacaa ttggcagcaa agcctttctt ctgtgagctt
     3421 caaggatgca aatatgaatt tgtgaccaga gaggctttgc tgatgcatta tcttaaaaag
     3481 cataactatt caaaagagaa ggtccttcag ttaaccatgt ttcagcaccg gtattcccca
     3541 ttccggtgtc acatctgcca aaggtcattt acaagaaaaa cacaccttag gattcattat
     3601 aaaaacaaac atcaaattgg cagtgacagg gcaactcaca gactgttaga cagtgaaaaa
     3661 tgtgaccatg aagggccgtg ttcagtagac aggctgacag gtgactgctc tgcagaactt
     3721 ggtcccaaca gcagttcaga gaccactcag tgtcactcta aaaaagatga gtgcagctcg
     3781 gaaacagacc tggagtcctc ttgtgaggag acagaaagta agatgtgtgg gatctcatca
     3841 ccaacaggta gccatagaga agagggggaa gggaaagagg ggagaggaag caggcggact
     3901 gttgctaaag gaaatctgtg ctacattttg aataagtacc acaaaccatt ccattgtatc
     3961 cacaaaactt gcaactcttc atttaccaat ctaaaaggcc tgattcgcca ttacagaact
     4021 gtgcatcagt acaacaaaga gcagttatgc ttagagaagg acaaagcaag aaccaaaagg
     4081 gaacttgtaa aatgtaaaaa gctatttgct tgcaagtata aggactgtaa caagcgcttc
     4141 ctgtgctcca aggccttggc taagcactgc agtgactctc ataacctaga ccacattgaa
     4201 gagtctaaag tgctttctga gacagagtct gcagcaaggt tctcttgtaa ccaaccacag
     4261 tgccctgctg ttttttattc attcagtaag ttgaaacacc acctgttgga acagcataat
     4321 attgaaggag aaatccattc ggattatgaa atccattgta ctcttaatgg ctgtggccag
     4381 attttcagcc atcgaagtaa ttacttccag catgtctact accgacataa ggactattat
     4441 gacaacctgt tcagcagcca gaaagtagca aatgagcggc ttctaaggag tgaaaaagtg
     4501 tgtcagacaa ctcaggcgca gggactgacg caggggcagg ggcagacaca gacacagggg
     4561 caggaacagc aggctgccaa aaggccattt aacactaaag ctaaaaagtg tggcttactc
     4621 aaagataaaa aagctccaat tagctttaaa acaagagcag aagctatcca tatgtgcgtt
     4681 gaacattctg agcacacgca gtacccatgc atggttcagg ggtgcttgtc tgtggtgaag
     4741 ctggaaagca gcattgtgag gcattacaaa cgtacccatc agatgaatag tgcctattta
     4801 gagcagcagt tggagaacct tgtggtttgt gttaagtatg gtaccaaaat taaagacgag
     4861 cccccttcag aagtagagcc ctgtgtaaag aaagaggaaa atgctagctg tgagtcagtg
     4921 cgcacagaga gccaatcccc aggagacagt agtgtgcccc tcccaaacac tgattccact
     4981 tgcccagctg aacaagatgg tggtcagaaa gggtgttcag aaagaaaccc agtttttgac
     5041 acacacagtc tgctctacag gggaactctg aaatgcaacc attcttcaga aaccacttct
     5101 ttggaacagt gtaatatagt tcagtcgcct ccctgtaaaa tagaaagccc cgtagctaat
     5161 cccagtggga cagaaagtgg aacttatttc acagacttcc agctgccatt accaaggatc
     5221 aaagaagaac ctgggcagca tagttcaggg caagaaaaca ctgtaaagaa tgcaacccag
     5281 gtcccaaaag agaacattag aaagcattct cagcccagat catttgatct gaagacttac
     5341 aagcctatgg gatttgagtc ttcctttctg aaatttattc aggaaagtga ggagaaggat
     5401 gatgattttg atgactggga gccttcagag catttaacat tgaataactc ttctcagccc
     5461 ggtaatgact tgacagggaa tgttgtggca gataccatag tgaatgacag cgaccctcaa
     5521 gttgacatac ctcattcctc cagtgaccct gcagttcctg agaacctgac tgcaatccca
     5581 ccattagtag tagctgaagc aacagcagtt ccttccttgg agaatctgag ggttgtgctg
     5641 gacaaagcat taacagactg tggggagctt gccttaaaac agcttcatta tcttcggccc
     5701 gtggttgtcc ttgaaagatc taagttctct acacccattt tagacttgtt tccaactaag
     5761 aagacagatg agctttgtgt tggaagttcc tgaatcgctc cagcactgca gtatggggac
     5821 acttgctaac gtgaacaaag gctgggaagc agccacactt gcttagggta gaataggctg
     5881 tgtatttaca tgaatgtaca gtatctgtgt cagcagtatt ggcggcgtcc agtagctctc
     5941 cagttggttt attggttggg attttttttt gtttgtttgt ttgtttgttt attaaaaaat
     6001 ggaactgtac tcttgtttgg tgctaattaa tacatcaaaa tatactgggg cttccttttc
     6061 caattaagtg tgcatgattg tatatggaac atatattaaa gtcccagggt gggagggcta
     6121 gggaaagggt aggaagttct tacttgactt gaatgtgcac ccaagggtgc tttgtgtaat
     6181 atattgtaca ctacagcatc ttatattttt tgagttgagt ttcaataaat tacaattttt
     6241 caccca
//
