LOCUS       XM_039100456            2186 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ripply transcriptional repressor 1
            (Ripply1), mRNA.
ACCESSION   XM_039100456
VERSION     XM_039100456.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100456.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2186
                     /gene="Ripply1"
                     /note="ripply transcriptional repressor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 4 Proteins, and 94% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:680702"
                     /db_xref="RGD:1588264"
     CDS             954..1679
                     /gene="Ripply1"
                     /codon_start=1
                     /product="protein ripply1"
                     /protein_id="XP_038956384.1"
                     /db_xref="GeneID:680702"
                     /db_xref="RGD:1588264"
                     /translation="MSQGRAYKRVSRGKAKRVLKVLRTGKAVWLGVPRMDPAVPAADP
                     AAAPAAAPAAVPAAAPAAAPAAAPDAVPDAAPDAVPDAAPDAAPHGQDLAQAPALAQI
                     NGREGAENEREAYLWRPWLSSINDQPRQARSLVDWAAGEATAAEAKADSEFHHPVRLY
                     WPRSRSFDYLYSAGEILLHNFPVQATINLYEDSDSEEDEEDKEEDEEEEEEEVNEIEA
                     EGCVGVPHEATAHSPDPYSTSPN"
ORIGIN      
        1 gaggtcagga ggaatatttt tgaaacctct aagcatgaag tgcctgccag ttgttgtaac
       61 tggaagcgtt ttggcaaggg cccaaaaagc tggctaatgc caagggctct gctcaaacct
      121 tttggctctc tagggtcact acccattacc cagctcttgt cacagagtgt tcaggttggc
      181 aaggctttgg ggaccactga gccagcaccc tcatctcacg tgagatgagg cctgggatgg
      241 tcctttggca acccaatgct gggcagaacc ctcccagcct ccagcacctg ggctccaaaa
      301 ctagaaactg agctgtgcca tttggaatct gccttgaaaa ctccctgggc ctgctccgct
      361 ccccacacca gaccactctc tgcttaggct gagggggttt taggcacttt tgcaattcaa
      421 ctgagcagtg agaggggagg ggagggcatt gaaagatgac ttgaggttta cccagcagga
      481 gactgaacct gctccaccca gaacccttct ttattctaag gcacgtgaca tgcttcatgg
      541 cagtgaccct ttatccgggt ccacctcgca aatctacttg ggatttgagc tgaaagagct
      601 ggtgagtccc tcactctctt ttctcactgg gaaccagctt tgctaaaggc ctggtattca
      661 gccttctgtc ccagacaagc ctgggtacct ttgggtacta atgagagccc ctcctttcca
      721 ctttgggacc tggtcctgcc tgggaaattc acacaaatgg tgtgaaattt gcccctactt
      781 tgttttcttt actgacttgg agctatagca gacccctcac ctccaccctg gaccctgttt
      841 actcaactgg gagagatttc acacccaaga acacagctct ctctccagga tccccctccc
      901 tagatcttta ccagcatccc gcatccccca tgcttgcatt gcctgaataa ttgatgagtc
      961 aaggcagggc ttataaaagg gtctctaggg gaaaagccaa aagagtgctg aaggttctga
     1021 gaactggaaa agctgtctgg cttggtgtcc caaggatgga ccctgctgtc cctgctgctg
     1081 accctgcagc tgctcctgct gctgctcctg ctgctgtccc tgctgctgcc cctgcagctg
     1141 ctcctgctgc tgcccctgat gctgtccctg atgctgcccc tgatgctgtc cctgatgctg
     1201 cccctgatgc tgccccccat ggccaggacc tggcccaagc ccctgcccta gcacaaatca
     1261 atggacgaga aggtgctgag aatgaacgag aagcttatct ttggagaccc tggctgtcct
     1321 ctataaatga ccagccaagg caggctagga gcctggtgga ctgggctgct ggtgaggcaa
     1381 cagctgctga ggccaaggct gactcagagt tccaccaccc tgtcaggctc tactggccta
     1441 ggtcccgctc ctttgactac ctgtacagtg ctggggagat attactacac aacttccctg
     1501 tccaagccac catcaactta tatgaggatt ccgacagcga agaggatgag gaagataagg
     1561 aggaggacga ggaggaagaa gaggaagagg tcaatgaaat tgaagcagaa gggtgtgtgg
     1621 gggtaccaca cgaggccaca gctcattccc ctgacccata ctcgaccagt ccaaattgaa
     1681 gcaattccag ttaaacttgg caggtttcca agggcatcaa ttagcaaagc gtctccagac
     1741 ccagcttttc tggattgaaa ccagtgtcct caggctgtct agctcaccct ggctttctgg
     1801 attggcctgc aagtctaggc ctctggcatg ttcttgtctg ggctgctctt gtgccaacag
     1861 taggaggttc ctcgggcctg gaagggacta gggaagactt gatttctgaa gccctcatga
     1921 agtagagcag aaaggatacc cctgtacagt gagcagtcac tcctcagggc ctttcgagtt
     1981 ttcaaagata ccaacaccag ttccaagcaa tactaaggca tctggaggga agggaaggga
     2041 agggtgtgga agggaagaag aaccttaaga atctgcttat ctggggacct gcatcccact
     2101 ttgcctgcta ttcacttagt ctgggtattg gcctaaggtg agtcaggaga aaaataaatg
     2161 gaatgatgtt tgcttttttc ttggaa
//
