LOCUS       XM_006235650            5062 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RIPOR family member 3 (Ripor3),
            transcript variant X1, mRNA.
ACCESSION   XM_006235650
VERSION     XM_006235650.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006235650.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006235650.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5062
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5062
                     /gene="Ripor3"
                     /note="RIPOR family member 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 4 long SRA reads, 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 40 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:688510"
                     /db_xref="RGD:1587669"
     CDS             525..3341
                     /gene="Ripor3"
                     /codon_start=1
                     /product="RIPOR family member 3 isoform X1"
                     /protein_id="XP_006235712.1"
                     /db_xref="GeneID:688510"
                     /db_xref="RGD:1587669"
                     /translation="MSVRLRFLSPGEAGAVGTVGRSASFAGFSSAQSRRVSKSINRNS
                     VRSRLPAKSSKAYGTLRKGSLCLDPRPQQVKKIFDALKRGLREHLCEQQAELDYLCRC
                     HTDTQRSSRLAFYYDLDKQMRMVERHIRKVEFHISKVDELYEGYCIQWRLRDGASNMQ
                     RAFSNSTQSRASRESLQELGRSLQECLEDMCLIEGTLEGHLGEFHVKMKGLVGYARLC
                     PGDQYEVLMRLGRQRWRLKGRIEPDDSQTWDEEERVFVPTVHENLEIKVTELRGLGSM
                     VVGAVTCDVADFFTARPQLVVVDITELGTIKLQLELLWNPLDSECRLVSPSPTGRFSV
                     GSRKGSLYTWTPPSTPSFRDKYYLSVLQQPMQQALLLGGPRATSILGYLSDSELQGPR
                     LRSRSQELLEMDSFSSEDPRDTETSTSASTSDVGFLPMPVAPTACIEEETREEPPPLG
                     LLPGLTHPAGGVLVEQPGWRDLRGERLDLLLDDPIHSPTVPRSRKGQEDGGAGDGVEG
                     PVQEVLDLLRSADPAQPQLRELEYQVLGLRERLKPRGVQPEPVSAQSLMDCILESFAF
                     LNADLASDELSLFGGSQALERDSPPPPRPSLKVSPSELTAGTPELDTLLTVHLQVCKA
                     LLQKLASPNLSRMVQDCLLEEAVQQRQVLEVLSDLDLEQVSKAKSVEEIIPQASQRKG
                     GLALWQGCTQPGGVLACPASTLLSQLKKTFLHRVRGKYPGQLEIVCRRLLEQVLGCGG
                     LFVTAGLQDEQVVTWFQFHSYLQRQNISDLEKHLTQLTKEVTLIEELNCAGPAKALRK
                     LHGKRLSQLQPLPQTLQAWARLQLDGPPRLCRAARMRLASAARNKRFREKALLYYTNA
                     LNDSDSKLQQAACMALQQLGGVESIEQIVSLCQSDLEAVRAAAREATLSFGEKGRLAF
                     EKMDKLHAEQEAFCQEADVEITIF"
ORIGIN      
        1 gagggaggga gcccgaccct gcctgcgagt gattagccgc agccccgcgc agcgcagtaa
       61 acagaaactt gcaggcgtcc cctccgctcc atcccaggca ggcatctaat cccgagtgat
      121 taatccgagt cgtcgggggc caagagcctt gcgtggactt ggaatcagcc gagatgggag
      181 taggaagtgg cctcctgcag ctacggcagg ggagtgtccg agcagcgcag tgacacgacg
      241 ggccagcgcg gcatccgggg gcgcagggcc ggggctggag gcttccggga accccggtcc
      301 ctcggccgct gaaccctgac acccgtcaga taagctctat ctcagaggcc agagccggga
      361 acagccggat acaggggcca ccgagtgcat tcccagaacc agcatccgcg gtggtcagag
      421 gactgcgggg agctccgcca gcccgcggtc ggtgacaacc agccagcgcc gggcagcagc
      481 gcagctcggt cccggaggtc cagacccgct ccacggcggc agccatgtct gtgcgactgc
      541 gcttcctgtc tcccggggaa gccggggctg tggggaccgt gggccgcagc gcctccttcg
      601 ctggcttcag cagtgcacag agccgaaggg tctcaaagtc catcaacagg aactctgtgc
      661 ggtcccggct gccagccaag tcctccaagg cttatggaac actgcgcaag ggttcgctgt
      721 gcctggaccc ccggccacag caagtgaaga aaatctttga tgctttgaag agaggcctca
      781 gggagcacct gtgtgagcag caggctgaac tggactacct gtgcagatgc cacacggaca
      841 cccagaggag ctccaggctg gccttctact atgacctgga caagcaaatg cgcatggtgg
      901 agagacacat ccggaaggtg gagttccaca tcagcaaggt cgatgaactc tatgaaggct
      961 actgtatcca gtggcggctt cgagatggag cctccaacat gcagcgtgcc ttcagcaaca
     1021 gcacccagag ccgtgcctcc cgggagagcc tgcaggagct gggccgcagc ctgcaggagt
     1081 gcctggagga catgtgcctc atagagggga ccttggaagg tcacctgggc gagttccatg
     1141 tcaagatgaa aggcttggtg ggctatgcac gcctctgtcc cggagatcag tatgaggttc
     1201 tcatgcgcct gggccgtcag cgatggcggc tgaagggccg gatagaacca gatgacagcc
     1261 agacctggga cgaggaggag agggtctttg tgcccacggt gcatgagaac ctggagatca
     1321 aggtgacgga gcttcgaggc ctgggctcca tggtggtggg tgcggtgaca tgtgacgtcg
     1381 cagacttctt cacagcccgg ccccagcttg tggtggtgga catcacagag ttgggcacca
     1441 tcaagctgca gctggagctg ctgtggaacc ccttggactc tgagtgccgc ctggtgtcac
     1501 ccagccccac tggcaggttc tccgtgggca gcaggaaggg ctccctgtac acatggacgc
     1561 cacccagcac ccccagcttc cgggacaaat attacctgtc tgtccttcag caacccatgc
     1621 agcaggcctt gctgctaggt gggccaaggg ccacctccat cctcggctac ctgtctgaca
     1681 gtgagctcca gggtccccgc ctgcgaagcc ggagccagga gttactggag atggactcct
     1741 tcagctccga ggaccccaga gacactgaga ccagcacttc agcatccacc tcagatgtgg
     1801 gcttcctgcc catgcctgtg gctcccacag cctgcataga agaggagacc agggaggagc
     1861 ctccacctct gggtctgctg ccgggcctga ctcacccagc cgggggtgtg cttgtagaac
     1921 agcctggttg gagggacttg agaggagaga ggctggacct actgttggac gacccaatcc
     1981 acagccccac cgtgccacgg agccggaagg gccaggagga tggaggtgcg ggggacggag
     2041 tggaggggcc tgtgcaggag gtcctggatc tgctgcggtc tgcggaccct gcgcagcccc
     2101 agctcaggga gctggagtac caagtccttg gcctccggga gcggctgaag ccccgagggg
     2161 tgcagccgga acccgtgtca gcgcagagtc tcatggactg tatacttgag agcttcgcct
     2221 ttctgaatgc cgaccttgcc agtgacgaac tgtctctgtt tgggggctcc caggctcttg
     2281 agagggacag ccccccacct ccacggccat cactgaaggt ctcgcctagc gaactcacag
     2341 ccggtacccc tgagctggac acactgctta ctgtccacct tcaagtctgc aaagccttgc
     2401 ttcagaaact ggcctcccct aatttgtcaa ggatggtgca ggattgcctc ctggaggaag
     2461 cggtgcagca aagacaggtt ctggaagtgc tttcagacct tgaccttgag caggtcagca
     2521 aggccaagtc ggttgaagag atcatcccac aggcatctca aaggaagggt ggcctggcac
     2581 tgtggcaggg atgcacacag cctggtggag tcctggcctg ccctgcctcc acactcctga
     2641 gccagctcaa gaagacattc ctacatcgcg tccgaggaaa gtacccgggc cagctggaaa
     2701 tagtgtgtcg caggctcctg gagcaggtgc tgggctgtgg cgggctattt gtcacagcag
     2761 ggctccagga cgagcaggtg gtcacctggt tccagttcca cagctacctg cagcggcaga
     2821 acatctctga cttggagaaa cacctcactc agctcaccaa ggaagttact ctcattgagg
     2881 aactgaactg tgcgggccca gccaaggccc tgaggaagct gcacgggaag cgtctaagcc
     2941 agctgcagcc attgccccag acgcttcaag cctgggcccg gctgcagctg gacggacccc
     3001 cgaggctgtg cagggctgcc agaatgcgac tggccagcgc ggccaggaac aagcgcttcc
     3061 gggaaaaggc cctgctatac tacaccaatg ccttaaatga cagtgactcc aagctccagc
     3121 aggcggcgtg catggctctg cagcagctcg ggggcgttga aagcattgaa cagattgtca
     3181 gtctatgtca gtctgacctg gaggccgtgc gagccgcagc acgggaagca acactgtcgt
     3241 ttggtgagaa aggccgccta gcttttgaga agatggacaa actacacgca gaacaagaag
     3301 ccttctgtca ggaagcggat gttgagatca caatttttta agaagccgtg ctcgatgagc
     3361 tcaaatctgg cctctttctt cctttcatgc tgcctggcct ccacagtgcc caggatttgg
     3421 atggagcatc caagccactc cctcccaagt gtgagctggt caggacagtt acctgagact
     3481 gggtcctcag cgcagggata acagtcatgt actcacagag caggcacaag tggtatgtgg
     3541 gacctctaag gctgtggcct ccgccaaatg ctgtttttgc catcctgggg tacagtgcca
     3601 ggcactgtct tgaggatcga ggatccaggg caaggtgaca gacatgcatg gggtatgagc
     3661 tccctgcata ccctcagctg ggacagaact ggtctgacaa acagggctgt ggcagcttcc
     3721 cagtaggcag gtccacttcc atggcagcct gggcccttgg atgaatgctc agacctgagg
     3781 aggttttcac tgcagcggct ggggagactc atgatgggtt agatacccac gaggggtttc
     3841 ctacttaagt gaatagagca ctccacgctg gcgtctgaga tgcccacgag ggggttctca
     3901 gggctgacat agtcatctct cacttaggtc cctgtggacc atgtgtgctg acttggtatt
     3961 tatttgcctt gttcatgtcc attctctgaa atctcaatta caaactctgg cgtatggcca
     4021 ccttactgcc ccaagtagag aatgttgtat ccgtagagcc ttaacatggg aggggcggca
     4081 ggcccactgg ggatccttcc tatattcttc atgcctgact catggtaggc tgccctcttc
     4141 tgggggcatt tggggacacc ccaggccttt gtcaagcctt cactgcactg gatttatccc
     4201 agtcactatt agtcagcttt ccacactggt aactctcaga gtcattttca tacctgaagc
     4261 ctttggttgt gagagcagcc acagcactca cagttctgtg gccaggaccc aagcggggac
     4321 cacctgatgc acaagccacc tgtgaacccg aagggtacag agctgtgctt tctgcagtga
     4381 catcttccac tccacaagtc tcaagtgact ctgaactgga agtcagtcac cttggggcct
     4441 tacatattta gttttataca tgaacggaag gtcacaccac ttttgggtct cattttcatg
     4501 tttaagtcaa gcatacatca gatgaggctt atggatgtcc tgagattgaa gaccatgaaa
     4561 tctgacaggc agctggccaa ggggaggtct ggatgctggg ccagggattc caatgacctg
     4621 tgagtctcaa ggtagcctgg gctgcccaag gggaggtcct gaaaggacag tgtagagaac
     4681 ccacatctca gcagtcacat gacgcacagt gtgcttaccc tgtaggcctc acgctggcag
     4741 gggtagacaa atgactgccc accctggccc aagtctgtga ataaagaaaa tgaaagcacc
     4801 tcacgtccct gttctttaaa aacatttatt gttgcaacta atgcagaccc attagtgaga
     4861 cacaagttgg aaacggtgca gtcggacagt tcggtgaggt cacagaagac cctgagacac
     4921 cccccgcacc tgcaaaggtg ctattccaga gcactttgtt gttggctttt atttttgtaa
     4981 aaatggttta ttctatggcc atttagagag agagagagag agagagagag agagagagag
     5041 agagagagag agagaacgag ag
//
