LOCUS       NM_001106241            3001 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus Ras and Rab interactor-like (Rinl), mRNA.
ACCESSION   NM_001106241 XM_001078499 XM_218477
VERSION     NM_001106241.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Woller,B., Luiskandl,S., Popovic,M., Prieler,B.E., Ikonge,G.,
            Mutzl,M., Rehmann,H. and Herbst,R.
  TITLE     Rin-like, a novel regulator of endocytosis, acts as guanine
            nucleotide exchange factor for Rab5a and Rab22
  JOURNAL   Biochim Biophys Acta 1813 (6), 1198-1210 (2011)
   PUBMED   21419809
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001106241.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.1648.1,
                                           SRR26643292.1641.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680413, SAMN06680414
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                JAXUCZ010000001.1  93204789-93204825
            38-160              JAXUCZ010000001.1  93206409-93206531
            161-320             JAXUCZ010000001.1  93206696-93206855
            321-423             JAXUCZ010000001.1  93209713-93209815
            424-496             JAXUCZ010000001.1  93211848-93211920
            497-561             JAXUCZ010000001.1  93212006-93212070
            562-708             JAXUCZ010000001.1  93212633-93212779
            709-1185            JAXUCZ010000001.1  93212866-93213342
            1186-1473           JAXUCZ010000001.1  93213660-93213947
            1474-1605           JAXUCZ010000001.1  93214110-93214241
            1606-1769           JAXUCZ010000001.1  93214371-93214534
            1770-3001           JAXUCZ010000001.1  93214620-93215851
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3001
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /note="Ras and Rab interactor-like"
                     /db_xref="GeneID:292760"
                     /db_xref="RGD:1310133"
     exon            1..37
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            38..160
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..1814
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /codon_start=1
                     /product="ras and Rab interactor-like protein"
                     /protein_id="NP_001099711.1"
                     /db_xref="GeneID:292760"
                     /db_xref="RGD:1310133"
                     /translation="MRLAQPDMVSAATTEEARLSWPLAEGADKSPLRVLSTTESLLRL
                     QRTQRVWQVPELDAEHAKAFLKPWPLGSFLVIGQDPDQVLMLKTGPSSGDINTYQIQK
                     FPGGVSLESSNLCMPDFPHLLAFLSASRDVLPRTLLLPTPTVGPGDKHSDPRRLGCIQ
                     VDTSGRVLSVVNQLYLETHGGWETETPQQTKPETGQKRSLAPRMPTPHRVSWVEESLK
                     PEAHHTGQEVHHPERQVHYPGPEAHSLGPEVHFPSPVLEEEEEVNNDSYKDEEEGCED
                     MLTAHIRALASARSSYVARQYQCLRARLISDSGNPYSPGDPATELLQDVRQLLTDLQD
                     YLAKDPDVRAVFGNRGPSIPREEDLGPAVEVALCRAVLEPLKPALWTKLRTLRAQELR
                     RLRRRQIALRVGAGPEGQSPALRNRIHARLAHLHAACAPRRKVALLLAVCSDVYAGLA
                     GGENKEPLGADAFLPALTEELIWSPHIGETQLDVEFLMELLDPGELRGEAGYYLTTWF
                     GALYHIAHYQPDAGRAPQELSSEARASLRQWHRRRTLHQQAQPTAPENQPFEEPWAIG
                     DP"
     exon            161..320
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            321..423
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            424..496
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            497..561
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            562..708
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            709..1185
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            1186..1473
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            1474..1605
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            1606..1769
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
     exon            1770..3001
                     /gene="Rinl"
                     /gene_synonym="RGD1310133"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttcacttc ctgctgctca ggctcccctc ggaacagctg gagcagcctt gagtcttgtc
       61 ttcctccatg ccagaggcca aagcatggct cactggtgcc tggcagcatg aggctagccc
      121 agccggacat ggtgtctgca gccactactg aagaggccag gctgagttgg ccactagcag
      181 aaggagcaga caagagccca ctgagggtcc tcagcacgac agagtcactt cttcgactgc
      241 agaggacaca gagggtgtgg caggtccccg agctggacgc tgagcatgcc aaggcctttc
      301 tcaagccgtg gccactgggg agcttcctgg tcatcgggca ggaccctgac caggtcctga
      361 tgttgaagac aggaccttcg tcaggagata tcaacaccta ccaaattcag aagtttcctg
      421 gaggtgtgtc cctggaatcc tccaacctct gcatgccaga ctttcctcat ctcctggcct
      481 ttctgtcagc cagcagggac gttttgccaa ggactctgct cttgcccaca cctactgtgg
      541 ggcctggaga taagcactca gatcctcgtc gacttggctg catccaggtg gacacctcag
      601 ggagggtgct gtctgtggtg aaccagctct acctggagac ccatggaggc tgggaaacag
      661 aaacaccgca gcaaacaaag ccagaaactg gccagaaacg cagtctagcc cccaggatgc
      721 ccactccaca ccgggtctcc tgggtggaag agtctctgaa accggaagct caccatactg
      781 gacaggaagt gcatcatcca gaaagacaag tgcattatcc tggaccagaa gctcactctc
      841 ttgggccaga agtacacttt cctagtcctg ttctagaaga ggaggaagaa gtgaacaatg
      901 acagctacaa ggatgaagag gaaggctgcg aggatatgct cactgcccac atccgtgctc
      961 tggccagtgc ccggagcagt tatgtagcca ggcagtacca atgccttcga gcacgactca
     1021 tctcagattc tggaaatccc tacagcccag gggacccagc cacagagctg cttcaggatg
     1081 tacgccagct cctcactgac ctccaggatt acctggcaaa agaccccgat gtcagagctg
     1141 tctttgggaa taggggacct agcatccctc gggaagaaga tcttggcccc gctgtggagg
     1201 tggccctgtg tcgagcggtt ctggagcccc tgaagcccgc cctgtggacc aaactccgaa
     1261 ctctcagagc ccaggaactg cggcgactgc gccggcgcca aatagccttg agggtaggag
     1321 caggacccga gggacagagc ccggccttgc ggaaccgtat ccacgcacgc ctcgctcacc
     1381 tgcacgcagc gtgcgccccg cgccgcaagg tggcgctgtt gttggcggtg tgcagcgatg
     1441 tctatgcagg cctggctggc ggcgagaata aagagcccct gggggctgac gcctttttac
     1501 ctgccctgac cgaggagctg atctggagtc cacatattgg ggaaacacag ctggatgtgg
     1561 agtttcttat ggagctcttg gatccagggg agttgcgagg agaagctggg tattatctta
     1621 ccacgtggtt tggggctctc taccacattg ctcactacca gcctgatgct ggccgtgcac
     1681 cccaggagct cagctctgag gcccgggcct ccttgcgcca gtggcaccga agacggacac
     1741 tgcaccagca agcccagccc acagccccgg aaaaccagcc ctttgaggag ccatgggcaa
     1801 taggggaccc atgatgattg gagtcctcaa aaatcagtct ccagaacctt ttggcccact
     1861 cctctgctaa gcaagattct ggaggcatct gggtcagcac agtgggtggg gcagaaaaaa
     1921 ggacgtggcg ttttgcactg gctgttccta cttccttcct tcccctcctg gtctgtccac
     1981 atgttacctc aatgaggctc tccccagcaa acaaaaccaa cgcctaaaca atactacaac
     2041 tacagccctc tcacctgaat ctctctgggg caggtagaat aaaggcacag tccccaaaag
     2101 gtatctacat cctgatccta tctgtgacta tgacacttaa cctggtcaag agatctttac
     2161 aaaaaatgag gcgtgtagtg acctgagacg ggagcttatt ctggattctt ctgtgcctta
     2221 tgtagttaaa agggtagcag aggtatgggg aacatcatga gtttatgccc ccagcagaac
     2281 ggggtggcaa aattacttga gaccaggact gtgaggacac tgtggtactg aaacatagta
     2341 ggtgttcagg acagtagcac tgaaacatag taggtgttta ggaacaaata tttgccttga
     2401 aaacatatca actgccctaa ccactgtgac cttagttgca aaagtgtttg tacagccatt
     2461 gttgttgttg ttgttttttg attttccaag acgtggctcc tctgtgtagc cctggctgtc
     2521 ctggaacttg ctgtgtagac caggctggcc tcaaactcag agatccacct gcttctacct
     2581 ctagagagat ggattaaaga cgtgtgccgc caccaccgcc cggctggggc cgccatgatt
     2641 gaagatgata agacgaggga cagtgtcccc ggggattgtg caggacaggg agaacggaag
     2701 gaaatgagga agagatggga ggatcagaaa gaaatgaaaa gacgctggct ttgaagtcag
     2761 agtaaagaga caagccacag atacagaagc caccagatgc tgggccgacc ccagcaaagc
     2821 cttctccccc cgagagctac agaagtcacg gggccccact gacatcctgg tgtctgtgag
     2881 attagtggtc cagaattgtg cgcagataaa tccctgctgt gttaagacac gaggtaacag
     2941 caacaacaac aacaacaaca acaataataa taataataca ttttaaaatg tactgactgg
     3001 g
//
