LOCUS       NM_001414929            3913 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus Ras and Rab interactor 3 (Rin3), transcript
            variant 1, mRNA.
ACCESSION   NM_001414929 XM_006240474
VERSION     NM_001414929.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3913)
  AUTHORS   Kajiho,H., Sakurai,K., Minoda,T., Yoshikawa,M., Nakagawa,S.,
            Fukushima,S., Kontani,K. and Katada,T.
  TITLE     Characterization of RIN3 as a guanine nucleotide exchange factor
            for the Rab5 subfamily GTPase Rab31
  JOURNAL   J Biol Chem 286 (27), 24364-24373 (2011)
   PUBMED   21586568
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Dec 15, 2022 this sequence version replaced XM_006240474.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.24950.1,
                                           SRR26643289.19138.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-284               JAXUCZ010000006.1  127196649-127196932
            285-492             JAXUCZ010000006.1  127231327-127231534
            493-610             JAXUCZ010000006.1  127242301-127242418
            611-683             JAXUCZ010000006.1  127265928-127266000
            684-775             JAXUCZ010000006.1  127274942-127275033
            776-2260            JAXUCZ010000006.1  127283446-127284930
            2261-2569           JAXUCZ010000006.1  127288373-127288681
            2570-2701           JAXUCZ010000006.1  127297439-127297570
            2702-2865           JAXUCZ010000006.1  127302490-127302653
            2866-3913           JAXUCZ010000006.1  127304774-127305821
FEATURES             Location/Qualifiers
     source          1..3913
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q32"
     gene            1..3913
                     /gene="Rin3"
                     /note="Ras and Rab interactor 3"
                     /db_xref="GeneID:314397"
                     /db_xref="RGD:1305849"
     exon            1..284
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
     CDS             244..3186
                     /gene="Rin3"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="ras and Rab interactor 3 isoform 1"
                     /protein_id="NP_001401858.1"
                     /db_xref="GeneID:314397"
                     /db_xref="RGD:1305849"
                     /translation="MRRAEAPASAHPAGPIPDAGKGEGEEDEEKDGMRPRLPTTPRNC
                     IPHRGISVLEKLVKTCPVWLQLGIGQAEAAKILQQEMAGMFLVCRDSSLKRLVLCVHF
                     PSLKNTSTEVLEYPIKEEKSILYLEGSVLVFEDIFRLIAFYCVSRDLLPFTLRLPQAI
                     LEASSFLELETISNLGLGFWDSSLNSSRGPAEPLRSSAPGTPASSGRPATHLANCSCE
                     IELSVGNDRLWFVNPIFIEDCTLPADPPPLPIGSYPTRPAPAAPDATSLTSKGSPRRP
                     PPPPPVPTVPPTGPAWPPAPPVQPADPLPNSPTPNSHLAPHAPGPPGHSNQPPMTACE
                     SLPRPSVGLGPFGEEEMKPGTTPSPLHQAPPPPLPLKKTLPAAPPRRRISERVSLESQ
                     NVGTSTDRDRSGISRTASLNLPPQSTVSSLGDRSPRTTEQGQDTEAKASHADSTPVPP
                     GKAKQPPVPPPRKKRVSRQLASTFPSPLTSPIPEVSPEKPAAPGAPWEGLSPAGQAGM
                     QHLQVQTSACPQSSPEFKGSLASLSDSLGVPASAADQDSYSTSSAEEELEFSSPNVKK
                     KPSMILDKARHRLSFASFTSVFHAFLSSDRKLYKKVVELAQDKGSYFGSLVQDYKVYS
                     LEMMTRQTSSTEMLQEIRTMMTQLKSYLLQSTELKALVEPTLHSEEELEAIVESALYK
                     CVLKPLKEAINSSLLEIHSRDGSLQQLKENQLVILATTTTDLGVTTSVPEVAVMEKIL
                     QKLTNMHKAYSPGKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLT
                     EMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIKNYDKITVTRQLSVEVQDSIHR
                     WERRRTLNKARASRSSVQDFICVSYLQPEQQSRTLASRADTVAQALCAQCAEKFEVAQ
                     PQDYRLFVLVDGRCFQLADEALPHRIKGYLLRSEPKRDFHFVYRPQDSGRDASNQPYL
                     VVREPNFL"
     exon            285..492
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
     exon            493..610
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
     exon            611..683
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
     exon            684..775
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
     exon            776..2260
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
     exon            2261..2569
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
     exon            2570..2701
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
     exon            2702..2865
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
     exon            2866..3913
                     /gene="Rin3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgccccagg gggctccctg ctgcgagcag ccgcggccga atggcttctg acaaaaaacc
       61 cttgaccacc agggccggcc tcttcctgca agccccgcgc gctgcgatcc aggaagtgga
      121 aggcagcggc tccgcgcttc cccactgggc gcgcggctgg cggcggcggc cggcccggcc
      181 ctcggcgagg gacagcgcca gcgccacgcg gaggtcgccg cgtccccaat cgcccgcccc
      241 acaatgcgac gcgccgaggc tcccgcgagc gcccaccctg ccggtcctat tccagatgct
      301 ggcaaaggag agggagagga agatgaggag aaagacggca tgaggcctcg tctgccaacc
      361 accccgagga actgcatccc acaccggggc atcagtgttc tagagaagct ggtgaagacc
      421 tgtcctgtgt ggctacagct agggataggc caggcagagg ctgccaagat cctgcagcag
      481 gagatggctg ggatgttcct ggtgtgccgg gacagcagcc tgaagcgact ggtgctatgt
      541 gtccacttcc cttctctgaa gaacacctcg actgaagttc tggagtaccc catcaaagaa
      601 gaaaagtcta tattgtacct ggaaggctcg gttcttgtgt ttgaggacat cttcagactg
      661 attgcgttct actgtgtcag tagagactta ctgcccttca ctctgcggct gccccaagcc
      721 atccttgaag ctagcagctt ccttgaactt gagaccatct ccaacctggg cctgggtttc
      781 tgggactcct ctttgaactc ttcaagaggc cctgcagagc cactcagaag ctcagcccct
      841 gggacccctg catcctccgg ccggcctgca acccatttag caaattgttc ctgtgaaatc
      901 gagctctcgg tgggaaatga ccgtctgtgg tttgtgaatc ccattttcat agaggactgc
      961 accctaccgg ctgatccacc tccactgccc attggcagct accctacacg ccctgcgcct
     1021 gccgccccgg atgctacctc actcacctcc aaggggtccc cacgtcgtcc cccacctcca
     1081 cccccggtac ccactgttcc tcctactggc cctgcctggc ctcctgcgcc tcctgtacag
     1141 cctgctgatc ctttgcccaa ctccccaaca cccaactctc accttgcacc ccatgcaccg
     1201 ggcccccctg gtcactcaaa ccaaccaccc atgactgcct gcgagagtct cccacgtcca
     1261 tctgtaggcc tgggcccctt tggagaggaa gagatgaagc ctgggacaac tcccagcccc
     1321 ttgcaccagg cccctccccc tccgctaccc ttgaagaaga ctcttccagc tgctcctccc
     1381 aggagacgca tttctgagag ggtgtctctg gaaagccaga atgtggggac ttcgacagac
     1441 agggaccgct caggcatttc taggacagct tcactcaacc ttcctcccca gagcaccgta
     1501 agtagccttg gggacaggtc tccaaggacc acggagcaag gccaggacac agaggccaaa
     1561 gccagccatg ctgacagcac accagtgcct cctgggaaag ccaaacaacc cccagtccca
     1621 ccccctagga agaagcgggt ctcccggcag ctggcctcaa cctttcccag tcccttgacg
     1681 agccccatac cggaggtatc ccctgagaaa cccgcggcgc ctggtgcacc ttgggaaggc
     1741 ttgagtcctg ccgggcaagc tggaatgcag cacctccaag tccagaccag cgcctgtccc
     1801 caaagctctc cagagttcaa gggttccctg gcctcacttt cagacagcct gggggtgcct
     1861 gcctcagccg ctgaccagga ctcttactca accagcagtg cggaggaaga gctggagttc
     1921 agcagcccca acgtgaagaa gaagccctca atgatcctgg acaaggcccg ccaccgcctc
     1981 agctttgcca gtttcaccag cgtcttccat gccttcctct ccagcgaccg caagctgtat
     2041 aagaaggtgg tggagctggc acaggacaag ggctcctatt ttgggagcct agtgcaggac
     2101 tacaaggtgt acagcctgga gatgatgacc cgccagacat ccagcaccga gatgctgcag
     2161 gagatccgca ccatgatgac gcagcttaag agctacctgc tacagagcac cgaactcaaa
     2221 gccttggtgg aacccaccct gcactcggag gaggaactcg aggccatcgt ggagtcagcc
     2281 ttgtacaaat gcgtcttaaa gcccctgaag gaggccatca actccagctt gctggagatc
     2341 cacagccggg atggctccct gcagcaactc aaggagaacc agctggtgat cctggccacc
     2401 accaccaccg acctgggcgt gaccaccagt gtgcctgaag tggctgtcat ggagaagatc
     2461 ctgcagaagc tgaccaacat gcacaaggcc tactcaccag ggaagaaaat ctccatcttg
     2521 ctgaaaacct gcaagcttat ctatgactcc atggctctag gcaacccagg gaagccctac
     2581 ggggccgacg acttcctgcc tgtgctcatg tacgtactgg cccgcagcaa cctcactgag
     2641 atgctcctca atgtggaata catgatggag ctcatggacc ctgccctgca gttaggagag
     2701 ggttcctact atctgaccac cacctatgga gccctggagc acattaagaa ctatgacaag
     2761 atcacagtga ccagacagct gagcgtggag gtgcaggact ccatccatcg ctgggaacgc
     2821 aggcgcacgc tcaacaaggc ccgggcctcc cgctcctctg tgcaggactt catctgcgtg
     2881 tcctaccttc agcccgagca gcagtcacgg acacttgcat cacgggcaga cacagtagcc
     2941 caggcactgt gcgcacagtg cgctgagaag tttgaggtgg cccagcccca ggactatcgg
     3001 ctcttcgtgc tggtggatgg gcgctgcttc cagctggcag acgaggctct gccgcaccgc
     3061 atcaagggct atctgctccg gagcgagccc aagcgagact tccacttcgt gtaccggccc
     3121 caggacagcg gcagggatgc ctcaaaccag ccctatctag tggtgcggga gcccaacttc
     3181 ctatgagatg acccccccgc tgagctgtcg tggccagagt gtaggaggat agagggactg
     3241 agactgggct ctcattggct gctccccttg accacgtata ctccccaaca aggtgcctgt
     3301 gtcaatcaca ctggtgtaag gcccactgag catgcctaag ccaatcaggc agaggcatag
     3361 cctgaggctc catgttcttc attggacagt aagggaaacc aggctcaagt ggaagaggct
     3421 ctctagccag cagcatcaag caagcccaac cctgcccaca ccctgttctt caggcaactc
     3481 cttctgcctt cccttggtca cgtcccacct cctacccctt tcctgggaag agctcgcttt
     3541 ccccaggact ggctaaggaa ggggttcctg gctccagctg ctacctgagc ctcaggatgg
     3601 agccgagatg ttggtccaca acaacccaag atctaagagt attgtgttga agagacagcc
     3661 ctgcaccgca cccctgcctc agaacttgcc ttcagctacc agagtgccta gtctaccagg
     3721 gcactggcac cggaagcagc caagccagct ccggggaaac atggacaagt tcaatgccat
     3781 gagattgggg gggttgggag ggtcattgaa agacctgttc tgtgatggaa acatcacagg
     3841 tcatcggtgt tgccaagacg cactatgggg gacgggggtg gggtggtaat aaaagccctt
     3901 ttgtaaatgc taa
//
