LOCUS       NM_001395104            5099 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus RAB7A interacting MON1-CCZ1 complex subunit 1
            (Rimoc1), mRNA.
ACCESSION   NM_001395104 XM_039102249
VERSION     NM_001395104.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000066.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001395104.2.
            
            On Jun 3, 2021 this sequence version replaced XM_039102249.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR8487231.37602.1,
                                           SRR8487227.148127.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-131               JACYVU010000066.1  843062-843192       c
            132-238             JACYVU010000066.1  839631-839737       c
            239-385             JACYVU010000066.1  838735-838881       c
            386-517             JACYVU010000066.1  836794-836925       c
            518-632             JACYVU010000066.1  835796-835910       c
            633-5099            JACYVU010000066.1  829143-833609       c
FEATURES             Location/Qualifiers
     source          1..5099
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q16"
     gene            1..5099
                     /gene="Rimoc1"
                     /gene_synonym="RGD1305938"
                     /note="RAB7A interacting MON1-CCZ1 complex subunit 1"
                     /db_xref="GeneID:310362"
                     /db_xref="RGD:1305938"
     exon            1..131
                     /gene="Rimoc1"
                     /gene_synonym="RGD1305938"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..916
                     /gene="Rimoc1"
                     /gene_synonym="RGD1305938"
                     /note="UPF0600 protein C5orf51 homolog"
                     /codon_start=1
                     /product="RAB7A-interacting MON1-CCZ1 complex subunit 1"
                     /protein_id="NP_001382033.1"
                     /db_xref="GeneID:310362"
                     /db_xref="RGD:1305938"
                     /translation="MAAAVSGVVRRVEELGDLAQAHIQHLSEAAGEDDHFLIRASAAL
                     EKLKLLCGEEEECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDCSPQKVKELLAF
                     LSEPEILAKENNMHPKLCDLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSNLL
                     QKYLVDGINYLLQMLNYRCPVQLNEGVSFQDLDTAKLLSTGIFSDIHVLAMMYSGEMC
                     YWGVKHCTDHQSGNHEVDTDVFGTSCTTHREPLDFREVGEKILKKYVSVCEGPLKEQE
                     WNTTNAKQILGFFQQRCS"
     exon            132..238
                     /gene="Rimoc1"
                     /gene_synonym="RGD1305938"
                     /inference="alignment:Splign:2.1.0"
     exon            239..385
                     /gene="Rimoc1"
                     /gene_synonym="RGD1305938"
                     /inference="alignment:Splign:2.1.0"
     exon            386..517
                     /gene="Rimoc1"
                     /gene_synonym="RGD1305938"
                     /inference="alignment:Splign:2.1.0"
     exon            518..632
                     /gene="Rimoc1"
                     /gene_synonym="RGD1305938"
                     /inference="alignment:Splign:2.1.0"
     exon            633..5099
                     /gene="Rimoc1"
                     /gene_synonym="RGD1305938"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtggacagg gcgggcgcgc ccgagctggc catggcggcc gcagtgtccg gtgtggtgag
       61 gcgggtggaa gagctcgggg acctggctca ggctcacata cagcacctta gcgaagccgc
      121 gggggaagac gatcactttt taattcgggc ctctgcagct ctagaaaaat tgaaactttt
      181 atgtggagaa gaggaggaat gttcaaatcc atcaaatctt ttggaactat acacacaggc
      241 catattggac atgacatatt ttgaggagaa taagctagta gatgaggatt ttcctgagga
      301 ctgttctcca caaaaagtaa aagagctgct cgcttttctt tcagaaccag aaattttagc
      361 taaagaaaac aatatgcatc ccaaactgtg tgatttgctt ggggatgagc tactggagtg
      421 cctctcttgg agacgagggg ccctgctgta tatgtattgc cattctctga ctaagagaag
      481 ggagtggctc ctgcgaaaat ctaatttgct tcaaaagtac ctggttgatg ggatcaatta
      541 cttgctacag atgctaaatt atcgatgccc tgtccagtta aatgaaggtg tttctttcca
      601 agacctagac acagctaaat tactgagtac aggaatattt agtgatattc atgtgctggc
      661 tatgatgtac agtggagaaa tgtgctactg gggagtaaag cactgcacag atcaccagtc
      721 aggaaaccat gaagttgaca ccgatgtctt tggaacaagc tgcaccacac acagagaacc
      781 cttggatttt cgagaagtag gagaaaagat tttgaagaaa tatgtgtcgg tgtgtgaagg
      841 acctctgaag gagcaggagt ggaacaccac caacgcgaag cagatcttag gcttcttcca
      901 gcagcgctgt agctaggcct tcatgtaggt ctcagctgga aagaagcaaa gattgctgaa
      961 gtggaaaaga tggttccgaa aacagagatg tactacactg atcttgagac tgttacacta
     1021 cataaagatg cccagtgtga ctacgcttct ctaatgctgt cacctttccc tctgtagtct
     1081 tgggtctgtg aagaaagtat tctctaattt ctgaaatggc atatgtgcca ttcgaactga
     1141 acctgaacta catgtaaacc tgccactggt aaggaggaac ccaatgtaga cggacagttg
     1201 ttttctaata ttttatgtta tattttttat tgtactaaaa tatatgtaac acagaatctc
     1261 cttattttga agtatgcata cttcaaagat gaaaatcagt ttttctcctt gtgtcaaata
     1321 tatggtatag atatcaatgt aggcaattgg aagattatga ctaataatta gatttcattt
     1381 ccagtaatct aaacatcaaa atattttaaa aatgaatctt atttattttg ctatgcatta
     1441 gtaataatac ttaaattatt tacttatcca ttttataaat tattttattt tgcttaaaat
     1501 aaaaactaca tggtttctcc aataatgaag gtaaaagtca gagtagagga gtctcccatt
     1561 agttcagatg cttttagggc acacctttgc atataatgaa ctttacatat gttttgcctt
     1621 tcactaggat ggaaatgcta aaggccaaag agcctagttt gctgtcttgc tcactgtttt
     1681 tctgcctacc tcaaatcctg ttgtcttgcg atggtctgta tgatacgttc cgatgcacta
     1741 ggcttttgtc ccagtggcat cttcacattc ccgtcatttc tgtaactgca cctaagcagg
     1801 aaccacactc agtttctctt tctgaagtct taaatattag taaatgatga caattctcat
     1861 ctttccagct ttcaaaattt ccttgatttt attggttttt ctctgcagct ttcaacctct
     1921 tcacaggctt ctttccagtg ctctaacctt gaacagtgaa cctctttcat gccttttttg
     1981 ccctaccctt catggggcat cacctgaata ctgtcctccc ttgtttcctc ttctgtctta
     2041 cctgttggag tcatcgttgg caggctctca cactgtatta tcttgtcagc cattccttct
     2101 taggagactg agttttatgg aaggcatgca gtccttcaaa gtatattgct acacatgtga
     2161 cttcctgtaa accctaactg caagctacta aggtgcctcc ccctcccact atggtagagt
     2221 caaagttcat tggtcacttc tacccttttt ctttcacagg aagtttagat tctgagagaa
     2281 tcaactcatt tatgcacttt tctgttttaa aggagaagag gttgccagct ttctgctgaa
     2341 gactgatctt tgttatttcc tttgtttctc ctgtagtttc tcagtttctg cctgtcctta
     2401 taaaaatttt gttctcttct ttctctctct ttttctttac tctaaatact catgttaagc
     2461 agtatttttc acagccatca tggcttttgt caggctgatt tctgggaact ggaatcccag
     2521 tctccttgct ctctgaattt tatttttaac tccctattaa atgtctccac tttgacaaat
     2581 actaactgca tggtcttttt aagttcaata tgagcaaata acaaattttc atctcttatg
     2641 gaaatcttct ctgcttcatt tccctcctgt tttgtatgtt ttcccaaata gcaaatagaa
     2701 ggtccacttc ccatccttaa ttctgcatac actcttattt gtgttctaga ccaacagttt
     2761 tcagacatca aaatcccagg cttctttttt ataaaattct gagtaagcag tggaagccaa
     2821 gggatatccc tcagtccctg ccacaactct tggcctgtct ttttacaacc aagattttta
     2881 tgtaacctag cattttagca agttttacta ggaaaatatc gtagctttct aaatcttcaa
     2941 tgtgaatttt agaagcacag atttctttac tgaatcctga tcaatcatca taatcaatca
     3001 aatgcttcca ctaccttccc aagcacttac gttttacagc cttagtactg ttatagacgt
     3061 cactattgct gggcccttct ctgtggccag ataagtactt tactggtgtg actaccatta
     3121 gtaatactgt gtctaaaggc ttttttcaac cctttccagt agaagttaga tgtttcttta
     3181 atttctctct tcctttccca tgtcaccaca gtacaaagta ttgtaattat ttttttttac
     3241 tactggatga acttcatatc ttaaaatttt atctttgcat tcactgttaa ttgtatggta
     3301 ggtagtaatg tttttttgaa ttaatgaggc atgatttgaa atgccaaact ttgcacaaaa
     3361 gggttgctgc tattgcattc caaactgcca tgctctctat accactggtt gatacagcaa
     3421 aagggagtat gtcttcctcg gaggagtaaa gtgttaattg aacactaaac ctgagaaaat
     3481 gagactttgt cttcagaagc tgagaacttc catttttgcc tttatgacct ttgtgtgctc
     3541 actggttggt ataattatga gggtatttct gggtgctttt tgtacaattt actccccttc
     3601 cccaaacaat tgaagaacaa tttgtagacc ataatagttg tagcactttc tatggtggtg
     3661 ttataaaagg aaaatgcatc tttttttatt aatttaatct tgatgagtaa attgttttat
     3721 ttagaatgaa gtaatctcaa aataacaaat actccacata agaacagtaa taagctataa
     3781 tagattcttt caacagctaa tgtttgccta caacatgttg tattctgtcc taggcactga
     3841 gggtatagct gtgtaagcac cccccccccc ccccgttata gagcttttag tggaggcgac
     3901 tgtacagtat gccaagtgat aacactgtaa agcacttagc agggtgtaag gactactgtg
     3961 actggagatg ggtgctattg tatgtagagt agttagaaag ttccatctaa gctgccttca
     4021 aattctatcc tgttgtttct catgccttgt attcagtaca ctcagatatt ttcctatgct
     4081 taagatcttc tcctttgttg tatttaatgt ctttctcatc tgtttctaat gcatgctgcc
     4141 taaagccttg ggttcttcat tcatctcaag tggttttctt tctaccctcc agttcccttt
     4201 tctattttct ataaggttat tacatctgcc cacagaaacc aaaactctat agtgtcttta
     4261 gcattacttc ctatatatct taaacacaat gtgaggtagt gttgtgtgaa acattacatt
     4321 aagaggtact taatatagac acaacatatg tattatatca tgctggtgtt tggtagcttt
     4381 tgctttcctg cttctagtaa aaatttatct tcagtttgaa ttttctgctg ttcattaaat
     4441 gtaaaatgtt ataggatttt caacaatcct taaatgttta tcattcttta ctcagtatgg
     4501 atttcctgat gtggagtaga ctttaagact tgatttaaga gcctgtctct tgctatgttt
     4561 ataggctgtc tggctggctg ctgtgcatta tttgatgtta aggcgcatat ggtgacatcc
     4621 tcttaccttt gcatacagtg gagagaggtg aaagtcatga ctaagagggc accataaaag
     4681 atacattccc agcttcagtc tcgtgctcag tattgtgatg ttcattaaag tatcaactgt
     4741 gtctgaaggt gttctcagtg atcttcatga tgttttcaaa acccactgct actaacatgg
     4801 tccacttgta cattgcttga ctccttgggc ccttttataa ctctatgagg atacttcatc
     4861 tgccacagta tccaggattc catagttctc tagtattact taccctgaat ttatttaata
     4921 taaaatgaaa tatattatag aagtattata tcaatataag cttaagatag ccagaattaa
     4981 aagtattcat tatgtattat gccggcgttt agtagttttg tttttgcaac ttttagtgac
     5041 attttccagc tacagtgttt tggagcatat gattaataaa ataaagtgac attccccta
//
