LOCUS       XM_006237315            5465 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ribosomal modification protein
            rimK-like family member B (Rimklb), transcript variant X3, mRNA.
ACCESSION   XM_006237315
VERSION     XM_006237315.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006237315.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006237315.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5465
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5465
                     /gene="Rimklb"
                     /note="ribosomal modification protein rimK-like family
                     member B; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 39 ESTs, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 50 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362428"
                     /db_xref="RGD:1560851"
     CDS             318..1481
                     /gene="Rimklb"
                     /codon_start=1
                     /product="beta-citrylglutamate synthase B isoform X1"
                     /protein_id="XP_006237377.1"
                     /db_xref="GeneID:362428"
                     /db_xref="RGD:1560851"
                     /translation="MCSSVSGKLWFLTDRRIQEDYPQKEILRALKAKCCEEELDFRAV
                     VMDEVVLTVEQGNLGLRINGELISAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRL
                     MNRPQAILNCVNKFWTFQELAGHGVPLPDTFSYGGHENFSKMIDEAEVLEFPMVVKNT
                     RGHRGKAVFLARDKHHLADLSHLIRHEAPYLFQKYIKESHGRDVRVIVVGGRVVGTML
                     RCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVC
                     EANANVGFIAFDKACNLDVAGIIADYAASLLPAGRLTRRMSLLSVVSTASETSEPELG
                     PPASAAVDNMSASSSSVDSDPESTTERELLTKLPGGLFNMNQLLANEIKLLVE"
ORIGIN      
        1 gatcagagag gtgataattg atagtgacat caggctgaca ctagacaacc ctggcttcaa
       61 actcactaag tggaccaggc tgcacttgaa ttctgcctgg aataaaaaaa aaagtgtgtc
      121 gccagctgct ctctccaccc tcccagtgcc aaagctggga gctctgtgtg tgttattcag
      181 actatcactg ccattcccct tcattaagaa aaattggaaa aataaggaat gaacactcgc
      241 agtatataac tacctttttt tgttgagata aaagtttgca tcagctagtc cttggaagga
      301 agaacaagca gaccgagatg tgtagctccg tgtctggtaa gctgtggttc ttgacagatc
      361 gtcgcatcca agaagactac ccacagaaag agatcctaag agctctgaag gccaaatgct
      421 gtgaagagga attggacttt agggctgtag tgatggacga ggtggtgctg acagtcgagc
      481 aaggaaatct gggtctgcgg atcaatggag agctgatctc tgcctaccca caggtggtgg
      541 tagtgagagt tccaacccca tgggtgcaga gcgacagtga tatcactgtt ttgcgccacc
      601 tagagaaaat ggggtgccgg ctgatgaacc ggcctcaagc catcctgaac tgtgttaata
      661 aattctggac gtttcaagag ctggctgggc acggtgtgcc tctaccagat actttttctt
      721 acggtggcca tgaaaacttt tctaaaatga ttgatgaagc ggaagtcctg gagttcccaa
      781 tggtggtgaa gaatacacgg ggtcatagag gcaaagctgt tttcttggca cgagataaac
      841 accatttagc tgatctaagc catcttattc ggcacgaagc tccatatttg ttccagaaat
      901 atatcaaaga gtctcatgga agggatgtga gagtcattgt tgtgggaggc cgtgtagttg
      961 gcaccatgct acgctgttcg acagatggaa ggatgcaaag caactgttcc ctaggtggtg
     1021 tggggatgat gtgctcattg agtgaacaag ggaagcagct agctatccag gtgtctaata
     1081 tcctggggat ggatgtgtgt ggcattgacc tgttgatgaa agatgacggc tccttctgtg
     1141 tctgcgaggc caatgcaaat gtaggtttca tcgcctttga taaggcttgt aatctagatg
     1201 tagctggtat catagcagac tatgctgcct cccttctgcc cgctgggcgg ctcacccggc
     1261 gcatgtccct gctctctgtg gtgtccactg ccagtgagac cagtgagccg gagctcggtc
     1321 cccctgccag cgctgctgtc gacaacatga gcgccagttc cagctctgtt gatagcgacc
     1381 ctgaaagcac caccgagcga gagctgctca ccaagctccc aggggggctg ttcaacatga
     1441 accagctgct agccaatgaa atcaaactcc tggtggagtg actccactgg taaatagtta
     1501 aacaacaaaa cccttgtaaa actgtctccc tgcaccccat ccccttcccc ttaaccaact
     1561 tgcaatgctg ttcatggaga atgttcagaa ggttgagata aaggtaaagt aagattgatt
     1621 agatgaaggg aaaatagatg agacccctta gtgtaatact taactgattc atttacagat
     1681 ctcacagaga ggaatacgaa gtgacacaca gagaaatggc aggctctcat gttaaccttt
     1741 tcagttacta aaagcctgct taaggccatg aggaacatga gaagtttttt tccctctcct
     1801 catggtttct tgcttttgtc tttatgtaga gtggtttcga ttcaagaact tggtagcatg
     1861 acttcagttt caagatttgt atagagaaaa acatccactt aaaatccaga aatgttttaa
     1921 ataataatct gaaaattctg cccgtttctc tcagctagca tttagcacat agtttatgaa
     1981 ctctaagggg ctctgactgg aatttatatt catgtttgtc tttgtttttt tttcccctta
     2041 atttgggtgg gagggtaatg tgactataac ccaataaaga tttttaataa caaaattggc
     2101 atgtttgcat gatgaaaggg aaatgaacag tattgcaatg tttggtatac aaagtagcat
     2161 ttactcagtg tagatggtta cactagttga agtttgtgca ttgacttgta tttgctagtg
     2221 atttagtctt tctcaaagga tacatgctct gttactgtta cattgttaac acatgctggt
     2281 aacacccttg ctctatgact gcatctttaa caatggccaa agtaaacaat gctacttttc
     2341 tggttaacaa gacaccactc aaaacataca tttaaaagtc tccctgcctt cccttttttc
     2401 tgtttggatg agttaaacat ttaaggatat aaaagacatt tctggaaggc aagtcaagat
     2461 attaggtata aagctgaaag gatttcttaa tgctaacttt ttatgtttgc agttttcaca
     2521 ttttagaaag aagtatatat gttgcatgca agtgtacatg ttttattctt tgtttacacc
     2581 aaacagaata gattctagag aatggcatga tgggaaacag ttttttactt aaaacaaaac
     2641 agatgaattg ccttagacct cgatagtata agatactccc cgaaagacaa taggaaagta
     2701 gatgtttctt aggcttttct gtgtgtatga atgttgtttg tttttgtaga ctgtttggtg
     2761 tatgatttat tcaaggctac atgcttttat ttaatgtcat ggctgtgcat tttgtttttt
     2821 atgcttaaga tctggaggga ggtgggctgg ttgttttggg ggggggttat ttaaatattg
     2881 agtctcatag ccctactcct aagccttcgg tactgaccac tctgttcctt ttttgaattg
     2941 atgaaaaccc caaactgcat ataatatgag cctttaacac gaggagtaaa atctagtcgt
     3001 gagtctggaa gatgtgttaa gaagtggaga tgcttcaggg gtcaacataa ttccccaagc
     3061 ttttcttgct tctccagtgc tgtttttctt cagatggacc ttaacataat ttctcggaca
     3121 ctacttagag acttgaaggc gataataaga catcagtatc atccagctca acagaggttt
     3181 gatcatggtt aactgtgtag ttctctcatt ttaaaaagga atgtaataaa acttggtttt
     3241 ccccatagaa ttaaataata ttgaaacgga gtgaaaggtt ttattgacaa atagaatagt
     3301 acctaatctg tgcactctca tttcacctca gaaaaaagac acacaaggag ttcctaatct
     3361 gtctttaggg cactctgatt gcatctgcag gttctgattt gcacagcatg attgggagtc
     3421 atacagacgt acctctgatt cgttaacaga ataaaagtac ttggtacttt gctgaatgat
     3481 catattttgg agggtgcata ctatttggta tagacataaa tgagcaactg tgtaatcaga
     3541 tcctaagacc atctggttgc cgcatacact atgatagaca tgtatgtaag ttcatgcatt
     3601 tgaaaacaaa tagagcatct tcacttgtta aaattcactt cttatggtgg gataaataaa
     3661 gaaacaggga aattatagtt agccattttt ctaaagcaaa cactataaga agtttcccca
     3721 gcagtttgac gcctggttat gcagccgctg tggagaagtg cagctcttca ccagccaccc
     3781 tctgggtatc acactcacat gtcacactga aagcaggaag ggtgctcatc aaattaaggt
     3841 aaacagtaag aacagatcgc tctggaagac ctcaaaggaa acaagtgaga gttgacttat
     3901 tttcataaat tttgtatagt catcactact gtgagaaaat gtgtcaaatt tgtgtaatcg
     3961 tgccaaaaat ctgaattact gtaaattttt tgtacactgt taaaattgta attcttaact
     4021 gtattttaat gattctgatt ttgtttttgt tacttatgat gagaattgga ctcggatcca
     4081 tgtattatga actatgccac ttaaacttac taaatttttt gatactttgt tcatttctgc
     4141 tgacttttct ccaatgaact ttgaaatctt tctctatgct atcaataaga aattaccttg
     4201 ggacgttaga aaaaaatcca accagagact tgatttcatc gggcactttc tcagactaag
     4261 acaaagccct gcaggcattg gagaggccac tgaccatcag tcgtctcact caagaagaag
     4321 agtggaagca cagaagctcc tcagtcactg aacccccagt ttggggttgg ggggtgttag
     4381 agacactgtg aaacccaatc ttgtgtcatg tctctctcct ggttcgctgt tttgagaagg
     4441 tttgtgggct atttggctgg tgagacacga tcccctccta agaacatgta ggtgctcaga
     4501 caggtaacct ctgctgctgc ttgtttgtct gtttgttggc tttcatttaa aatttacttt
     4561 tgttgtgcta ggatttttta agatgtaata tattgcaggg tttataacca ggttcactgc
     4621 tttcttttgt ttcttaaaaa agaagtttca tttagtgtaa tgtaggcgcc ttggagtgtt
     4681 tcagtgacaa gtatctcaga agcctgccgt tggagccatc tagtcttcca gattagattg
     4741 gaaatgtttt tcgttttggg gtttcttttg ctttctttat cccagtgcac tttgccacac
     4801 cttttggggt ggctgctaac tctagtgaaa atattttttc tatgtcaaca aaaatttggt
     4861 tcttaaaatt tccttaatgt ttacattttt aaaattgttt ttcaagaaat attctaatat
     4921 tttgcactgt tactgttctt tgccagcctt ttcaggagcc aaaatataca aatacaaaca
     4981 aacaaaaaat actcagagaa aatactttcc ttcttccccc ttcctgctga tgagtgagac
     5041 gttttgagag ctttggggtc agtgcccttc taaacttccc ctcccccagt aacgcagctg
     5101 cgcagtgcgt gctcagtgca gtggctcgga ccgtgcccag cccagcctgc tggcagcaga
     5161 gagataaact ggtaggtggc agcagagaaa ggaattcctc agactgatgg ctgttgactg
     5221 agaagagata gcatgagact accgagtggt ggaggagcag cagagatgaa ggctggactc
     5281 aggaaggctg cctctttact gaatggttct ctccaagtaa ccagtgatct cctggagaag
     5341 acagaactcg tcactttaga gtggagcgag gatacggaat aagaaagaag ttgttctttg
     5401 tgtcctgttg cattcagtgt gggttttctt tgtgtaaatt aaaacactga atggggatac
     5461 ataaa
//
