LOCUS       XM_056985553            4120 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ribosomal modification protein
            rimK-like family member A (Rimkla), mRNA.
ACCESSION   XM_056985553
VERSION     XM_056985553.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056985553.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-360               JACYVU010000162.1  47647780-47648139   c
            361-591             JACYVU010000162.1  47634040-47634270   c
            592-678             JACYVU010000162.1  47630997-47631083   c
            679-882             JACYVU010000162.1  47626685-47626888   c
            883-1310            JACYVU010000162.1  47624289-47624716   c
            1311-4120           JACYVU010000162.1  47621478-47624287   c
FEATURES             Location/Qualifiers
     source          1..4120
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4120
                     /gene="Rimkla"
                     /note="ribosomal modification protein rimK-like family
                     member A; The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 16 ESTs, 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 78 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:313553"
                     /db_xref="RGD:1306880"
     CDS             198..1364
                     /gene="Rimkla"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: N-acetylaspartylglutamate
                     synthase A"
                     /protein_id="XP_056841533.1"
                     /db_xref="GeneID:313553"
                     /db_xref="RGD:1306880"
                     /translation="MCAQVWLLTDRLIREDYPQVQILRALRQRCSEQDVGFRAVFLDQ
                     IAVTVVGGHLGLQLSQKPLTTFPDVVVVRVSTPSVQSDSEITILRHLEKLGCRLVNRP
                     QSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHR
                     GKAVFLARDKHHLSDICHLVRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCST
                     DGRMQSNCFLGGVGVKCSLTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFMVCEANA
                     NVGFLAFDQACNLDVGAIIADYAMSLLPNRQTGKMAILPGLASPREKSEPNGCVSAQG
                     VAESVYTITNGSTSSESEPELGEARDSSAKTMGAPPAMLPEPGYSINRIPSRVQ"
ORIGIN      
        1 gcgtcctccc cgggcggcgc gacgtgctga ttggctgggc ggaggcggcg gagacggcgg
       61 cggcggcgcg gggcgatcgg gagcattcgc cggcagggtc tgcagaggcg cctggcgcac
      121 ggcgcaagcg gagctgcggt gctcgcctgg gacgcgccag ggggtcgcgc gggcgggcga
      181 ccgcagcttc ggtcgccatg tgcgcgcagg tctggctgct gaccgaccgg ctcatccgcg
      241 aggactaccc gcaggtgcag atcctgcgcg cgctccgcca gcgctgctcc gagcaggacg
      301 tgggcttccg ggccgtgttc cttgaccaga tcgccgtcac ggttgtcggc ggccacctag
      361 gcctgcagct gagccagaaa cccctgacca ccttccctga cgtagtggtt gtccgagtat
      421 ccacgccttc tgttcagtca gacagtgaaa tcaccatcct gaggcacctg gagaagctgg
      481 gctgccgcct ggtcaaccgt cctcaaagca tcttaaactg catcaacaag ttttggacat
      541 tccaagagct ggctggacat ggggtcccca tgccagacac cttctcctat ggtgggcacg
      601 aagacttctc taaaatgatc gatgaagcag agcccctggg ctacccagtg gtggtgaaga
      661 gcacccgggg acaccgggga aaagctgttt ttctggccag agacaagcat cacctttctg
      721 acatctgcca cctggtccgc cacgacgtgc cctacctgtt ccagaagtat gtgaaggagt
      781 ctcacgggaa ggacatccgg gtggtggtgg tgggtggcca ggtgattggc tccatgctgc
      841 gctgctccac agatggccga atgcaaagca actgctttct aggtggtgtg ggtgtcaagt
      901 gctcactgac agaacaaggc aagcagctgg cgatccaggt gtccaacatc ctgggcatgg
      961 atttctgtgg catcgacctt ctcattatgg acgatggctc cttcatggtg tgtgaggcaa
     1021 acgccaatgt cggcttcctg gcctttgacc aggcgtgcaa cttagatgtg ggggcaatca
     1081 ttgcagacta tgctatgtcc ttgctgccaa acaggcagac tgggaagatg gccatcctcc
     1141 cgggactggc aagtcccaga gagaagagcg agcccaatgg gtgtgtttca gctcagggag
     1201 ttgcagagag tgtctatacc atcaccaatg ggtctacctc tagtgagagt gaacctgaac
     1261 tgggagaggc ccgggattcc tcagcaaaaa caatgggggc cccgcctgcc atgttacccg
     1321 agcctggtta cagcattaac aggatccctt cacgagtcca gtgaattcct gctttcttgg
     1381 cagcatttaa accaaatgct actgcttccc tgagtagtgt tcagtgaatt aggtctggac
     1441 taacgtgatt tcatttgcac agaaactaga aaatcccatc tgggcactca gcatcctttc
     1501 taataacagt ttgaaccaat ggcctagctt tgtggttttt gtaaagactc atataaaaaa
     1561 cactcatcga gaacaacttc ccgaatgatc gacttgaggc caacgtctat tgcaagcacg
     1621 tcagtggaca ggtaggactt ttaaggcgct gagtccatgt tgctgtccct ggtcgttagc
     1681 agcaatgaac atgaacttgg ctcctggaaa catcgtcctc acatgcagga gatggaggcg
     1741 tttgcaggtg ggcgggatgt tcctgtctac tccccctccc ggtcaccatc ttaccacatt
     1801 cctccgacac tcggcttctc accgaagcgc tttgtagaag gtgaggtgga acacactttg
     1861 acctcgccgg ttggcatgtg tcctgctttg taacagggga tctctacaga tcgctttgtc
     1921 tctcgtaatc cacactcctg ctttacctat gtcagctcca gcagctttac acacctttgc
     1981 tgcctttggc ctcagctgga aatgcatctg ataagctatg gccacactct ttgtttcttg
     2041 tgcactagaa ctcaacacca tggacttttc cttttcagtg gactccgctc acttgtcatc
     2101 tggaaaccag tgggatttta ctgcagaaag ttcctgggcg atgaccgttc ttccccagct
     2161 tcttctggac atgctcctgt tatccagact ccaggaacct gtccttaccc atttttccaa
     2221 attggggaga cttgggtatt cgtggagggg tgagtgggtt attgtagaca ggataccatg
     2281 tgcttttctt tctcactctt taagcagcag tagatgacat ctttcccctg ggagaaacgg
     2341 tagagatagt tttgcatctg ctaatagaag gtctaactgg gggttgggga tttagctcag
     2401 cggtagagca cttgcctatc gagcacaagg ccctgggttc ggttcccagc tctgaaaaaa
     2461 agaaaaaaga aaaaaaaaaa aaaaggtcta actgaaaaca agcaatgacc taacccaccc
     2521 agagttacct cattatactc acgaggaaga cccacttcag atattttacg gccggtgcca
     2581 agaacattga ggatccctct ttgggattac ttcagtagct gtcaaaggga agaggccttg
     2641 taacttgatc aataggcctt gtttagtttc ttttaccctc cacccccacc cacccctcac
     2701 aactcccgct acctgccaag ttccaccacc cattgtattt accagacaca atgctctttg
     2761 gctattaaaa aattatagac ttatcgtaaa ggacaaagat ttgcccatac tggggaggca
     2821 tataaaagtt caaattttcc aaggaaggtt ctagaaatat gagttgggtc agctacactg
     2881 gagtaaacat acactttata aggtatctac ttcgaaggca ccaccacccc atgggcacgt
     2941 aattcctgta ctataagtat aaagtgtata taaagccaca tgataatgtt ttttcacaac
     3001 acatttaaat agaaattggc ctttaaaatc aggcaacacc agatttcacc aactgacagt
     3061 cacacacctg aaaatgttgg tgccatgtga cagatgtcac acctcaccgt ctcacccctg
     3121 ggtacatgcc actgaactgt aatctgagtg tgtgtctgta ccgttggaaa aggacagttc
     3181 acccttatag actaagactc gaatcttctc cttagcaccc atgggtggct ctaaaagaag
     3241 gatagttata ttctcttcct gctggaagtg gtcagatatg agccaggcat tggcttagcg
     3301 caagcctctt cttgttgatc taagtccacc taggccctac ctgtgcagag cgacttggag
     3361 tgtttccaga ttcctttgcc aaaggaggcc catttcccag ctggcagaga cgtctgccaa
     3421 cggtgttatt gcccagaact aaccctgccc agaggcagag aaagctgact ctcatctgga
     3481 tcctagcccc actctgggat ttccatatca cagctggcca tggttgcttc cttgagtctc
     3541 agctctgtgg ccccgccata cttgccacag ctgcctggaa agaacgtgga gatgcagagc
     3601 gggagtctga cgctggctct cccagcacag ctaggcacct gagctctgtg tctccatttt
     3661 tccattctgt agacagggaa aatggcctat ttcatttacc tcgtggtgca ctctgaggct
     3721 gaagtgagtt actaagcata gctgtctgtc tgggaggagg taacagacac ctcccaatgt
     3781 agcgttgtgt ttatcatcgc tcctgagaga gttaagaaag gaagaggcta tgcattcttg
     3841 tccttagcaa gctcaacaat aggaggggcc ctgaaacaca gaatgcagcc tgacttacaa
     3901 cctgaaagga cttagacacc caaagaacct tctggatgta ccctgcataa cctgaaaccc
     3961 ttgactcatg tatgccaaca ctaagtcttc ctccgtaata tagattcagg gtatgtgtgt
     4021 ggtctttcca ctgtctggta acaacatctt gaaactggtc aaaacttgaa tgtcaatagc
     4081 tcagtcactc agaatataca tgattctgca cttggaaaaa
//
