LOCUS       XM_039089128            5539 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RIMS binding protein 2 (Rimbp2),
            transcript variant X3, mRNA.
ACCESSION   XM_039089128
VERSION     XM_039089128.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089128.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5539
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5539
                     /gene="Rimbp2"
                     /gene_synonym="Rbp2; RIM-BP2"
                     /note="RIMS binding protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 25
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:266780"
                     /db_xref="RGD:708533"
     CDS             228..4310
                     /gene="Rimbp2"
                     /gene_synonym="Rbp2; RIM-BP2"
                     /codon_start=1
                     /product="RIMS-binding protein 2 isoform X1"
                     /protein_id="XP_038945056.1"
                     /db_xref="GeneID:266780"
                     /db_xref="RGD:708533"
                     /translation="MREAAERRQQLELEHEQALAILNAKQQEIQLLQQAQVEAKKEHE
                     GAVQLLESKVRELEEKCRVQSEQFNLLSRDLEKFRQHAGSIDLLGSNSVALLDVPLAP
                     GKPFSQYMNGLATSIHKGHEGPTGHYSVIGDYIPLSGDKLESPCVKPSFLLRSSSPRC
                     RFESEMDDDRSSNKSKHSSSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYG
                     DMDEDGFYEGELLDGQRGLVPSNFVDFIQDNESRFAGTLGSEQDQNFLNHSGISLERD
                     SILHLHSPTQVDSGITDNGGGTLDVNIDDIGEDIVPYPRKITLIKQLAKSVIVGWEPP
                     AVPPGWGTVSSYNVLVDKETRMSLALGRRTKALIEKLNTAACTYRISVQCVTSRGNSD
                     ELQCTLLVGKDVVVAPSQLRVDNITQISAQLSWLPTNSNYSHIIFLNEEELDIVKAAR
                     YKYQFFNLRPNMAYKVKVLAQPHQMPWQLPLEQREKKEACVEFSTLPAGPPAPPQDVT
                     VQAGATTASVQVSWKPPALTPTGLSNGANVTGYGVYAKGQRVAEVIAPTADGAAVELV
                     RLRSLEAKAVSVRTLSAQGESMDSALAAIPPDLLVPPAPHPRTAPPPKPLASDMDTKD
                     LGPHVKVDESWEQSRPPGPAHGHMLEPPDMHSTGPGRRSPSPSRILPQPQGAPVSTTV
                     AKAMAREAAQRVAESNRLEKRSLFLEQSSAGPYANSDEEDGYASPEVKRRGTSVDDFL
                     KGSELGQQPHCCHGDEYHTESSRGSDLSDIMEEDEEELYSEMQLEDGGRRRPSGTSHN
                     ALKEYHKARSLEGAFLEQPEFPQQPHRSKRLFSIPEVAEEDAEHGEPLLRQGMGSSRA
                     RALLAMERGPARSCWGHPVLQGSWLPAEHRGPGIYMEDLFLEDRGCRFSRSATRSPDS
                     GLDCGSEEEESRFSFRSTSAKCSPGPGHCPCRRSPRPLLARRRTLTRQSSIEEDFGEQ
                     VDPSDVIRSDDTQPSPERPVPRRDGWDEASDHEDFRGVWRKSPAMPDSRAAERLTQPP
                     PRVADGPLILGNSALMGRGDRMEHVSRRYSHSGGGPQRHRPMAPSIDEYTGRDHLSPD
                     FYDESETDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDAD
                     GFYRGETCARLGLIPCNMVSEIHADDEEMMDQLLRQGFLPLNTPVEKIERSRRSGRGH
                     SVPTRRMVALYDYDPRESSPNVDVEAELLFCTGDIITVFGEIDEDGFYYGELNGQKGL
                     VPSNFLEEVPDDVEVHLSDAPPHYSHDPPMRTKAKRVPPEGSGTARRAPSPTAHLHSG
                     SPTSSMGSGSPGRGREMSSKKKKGLLSRGKKLLQRLAAVK"
ORIGIN      
        1 tcgggatcat ttcctttgcg ggaagatgaa ctaaaggctt ctgtgcagag ggagcatcgc
       61 ctgaggcccc tggaaaggcc ttcccttgag ggcccggcag catgaccagg tgaaggccga
      121 acatgcctgg ctctccgtgg tgacctgaga ggagagttcg attcgctgtg agggagaaac
      181 gccagctcca agccaaactg gagaacttgg aacaggtcct gaagcatatg cgagaggctg
      241 ctgagcgaag gcaacagctg gagttggagc atgagcaagc cctggccatt ctcaatgcca
      301 agcagcagga gatccagctt ctgcagcagg ctcaggttga agctaagaaa gagcatgaag
      361 gggctgtaca gctgttagag tccaaggtcc gagagctgga agagaaatgc cgtgtgcaaa
      421 gcgagcagtt taacctgttg tcccgggacc tggagaagtt ccggcaacac gctgggagta
      481 ttgacctgct gggaagcaac tcagtggcct tgctggatgt ccctctggcc cctggcaagc
      541 ctttctcaca gtacatgaat ggactagcca cttccatcca caaaggtcac gagggcccca
      601 ccggacacta ctctgtgatt ggtgactata tcccgctgtc tggggacaag ctggagtctc
      661 cgtgtgtgaa gccctccttc ctgttgagat ccagcagccc aagatgcaga tttgagtccg
      721 agatggacga tgaccggagc tctaacaagt ccaagcacag cagctcgggg aaggtgcacc
      781 tgtgtgtggc ccgctacagt tacaacccct tcgatgggcc caatgagaac ccggaagcgg
      841 agctgcctct cacggcggga aagtatctct acgtctatgg ggacatggat gaagatgggt
      901 tctacgaagg agaacttttg gatgggcaga ggggcttggt gccgtccaac tttgtggatt
      961 ttatccagga caacgagtca cggttcgctg gcactctggg gagtgagcag gaccagaact
     1021 ttctcaacca ctctggcatc agtctggaac gcgacagcat ccttcacctc cactctccaa
     1081 ctcaagtgga ctcggggatc actgacaatg gtgggggaac cctggacgtg aacatcgatg
     1141 acatcggaga agacattgtg ccttacccta ggaaaatcac cctcatcaaa cagcttgcca
     1201 aaagtgtcat cgtgggctgg gagccccctg ccgtgcctcc cggctggggc accgtgagca
     1261 gttataatgt gctggtggac aaagagacac gaatgagcct tgccctgggt aggagaacta
     1321 aggcgctaat cgagaaactt aacacagccg cctgcaccta ccgcatctcc gtgcagtgcg
     1381 tcacgagccg gggtaactcg gacgagctgc aatgcacact gctggtgggc aaggatgtgg
     1441 tggtggcacc atcccagctg cgtgtggaca acatcacaca gatctccgcc cagctctcgt
     1501 ggctgccgac caacagtaac tacagccata tcatcttcct caatgaagag gaattggaca
     1561 tcgtgaaggc agccaggtac aagtatcaat tcttcaacct caggcctaat atggcctaca
     1621 aggtgaaggt cttggcccag ccacaccaga tgccctggca gctgccgctg gagcagagag
     1681 aaaagaagga ggcctgtgtg gagttctcca cgctgcctgc aggccctccg gccccgccac
     1741 aagacgtcac cgtccaagct ggggccacca ctgcctccgt tcaggtctcc tggaagcccc
     1801 ctgcactgac tcccactggg ttgtccaatg gagcaaatgt cacaggatat ggcgtgtacg
     1861 ccaaagggca gagggtggct gaagtcatcg cccccacagc agatggcgcg gcagtggagc
     1921 tggtccggct gcgcagcctg gaggccaagg ccgtgagtgt gcgcaccctg tccgcacagg
     1981 gagagtccat ggattctgcc ctcgctgcca tcccccctga cctcctggtg cctccagccc
     2041 cccacccgag gactgctccc ccaccaaagc cattagcaag tgacatggat accaaagacc
     2101 tgggtcccca cgtcaaagtg gatgagtcct gggagcagag ccggccaccg ggccctgctc
     2161 atggccacat gttggaacca cctgacatgc atagcactgg ccctggcaga aggtcaccct
     2221 cgcccagccg gatccttcct cagccacaag gagcccctgt gtcaaccacc gtcgccaagg
     2281 ccatggcccg tgaagctgca cagagggtag ctgagagcaa caggttagag aaaaggagcc
     2341 tctttttaga gcaaagcagt gctgggccgt acgccaactc agacgaggag gatggctatg
     2401 cctcccctga ggtcaagagg agaggcacat cggtggatga cttcctgaaa gggtcagagc
     2461 tgggccagca gcctcactgt tgccatggag atgagtacca cacagagagc agccgggggt
     2521 cagacctgtc ggacatcatg gaggaagatg aggaggagct atactcagag atgcagctgg
     2581 aggatggggg ccggcgtcgg cccagcggta cctctcacaa cgccctcaag gaataccata
     2641 aggctaggag cttggaaggt gctttcctgg agcagcccga gttcccccaa cagccccacc
     2701 gcagtaagag actgttcagt atccctgagg tagctgagga ggacgcggag cacggcgagc
     2761 cgctgctcag gcagggcatg gggtcctccc gagccagggc cttgttggcc atggagcgtg
     2821 gcccagcgcg gtcctgttgg ggacatccgg tcctacaggg atcctggctc cctgcagagc
     2881 acaggggccc aggcatctat atggaggacc tctttctgga agacagaggc tgtcggttca
     2941 gccgctcggc caccaggagc ccggacagtg gtttggattg tggcagtgag gaggaagagt
     3001 ctcgatttag tttcaggagc acctcggcca aatgcagtcc aggccctggt cactgtccct
     3061 gtaggagaag cccgaggccc ctgctggccc ggcggaggac gctgacccga caaagcagca
     3121 tcgaagagga ctttggggag caggtggacc ccagtgacgt catcaggagc gatgacaccc
     3181 agcccagccc ggagaggccc gtgcccagga gggatggctg ggacgaggcc agcgatcacg
     3241 aagattttcg gggtgtctgg aggaaaagcc cagctatgcc cgacagtagg gcagctgagc
     3301 gtctcacaca gcctcctccc cgagtggcag acggcccttt gattttagga aactccgcct
     3361 tgatgggacg aggagaccgg atggagcatg tgagccgaag gtattcgcac agcggcggag
     3421 gtcctcagag acataggccg atggctccat ccattgatga atacacgggg cgagaccatc
     3481 tttctccaga cttctatgac gagtcagaaa cggaccccgg tgctgaggag ctcccggccc
     3541 gcatcttcgt tgctctgttt gactatgacc cgctcaccat gtccccaaac ccggatgctg
     3601 ccgaagagga gctgcccttc aaagaaggac agatcatcaa ggtatatgga gacaaagacg
     3661 cagatggctt ctaccgtggg gagacctgtg ccaggctcgg cctcattccc tgtaacatgg
     3721 tctccgagat ccatgcggat gatgaggaga tgatggacca gctgctgaga caaggcttcc
     3781 tccctctgaa cacacccgtg gagaaaatag agagaagtag aagaagcggc cggggtcact
     3841 ctgtacccac acggagaatg gtggctctct acgactatga ccctcgggaa agctccccta
     3901 acgtggacgt tgaggctgaa cttctgtttt gcacaggaga cattattact gtttttggtg
     3961 aaatcgatga agacgggttt tattacggag agctgaatgg gcagaaaggc ctcgtgcctt
     4021 ccaatttcct ggaagaagtg cctgatgacg tggaggtcca cctttccgat gctccgcccc
     4081 actactccca cgacccgccc atgcgcacca aggccaaaag ggttcctccc gagggttcag
     4141 ggacagcaag gagagctcca tcccccacag cccatctcca ttcggggtca cctacgtcat
     4201 ctatgggttc tggtagtcct gggagaggca gggaaatgtc ctcgaaaaag aaaaaagggc
     4261 tgctctccag aggcaagaaa ctgctgcaga ggctggctgc agtgaagtga ccccctgagc
     4321 ctccggacac ttccaaatcc atgtcactcg ctttaattcc aaacgaggac tcccaaaacc
     4381 caaccttgac cccaccccac cgcagcagta gagagataca ctcttacact accattcaca
     4441 tgacaccacc ggagagatca gggaaggggc tgcaccacgg tcccctccct ctctgctccc
     4501 aaggttctgt ccaaggtctg gggaggggga gagggaaggg cagctggctg agcagcaggg
     4561 gtgggggagg gctctctgca gccgcctccc ctccacctgc agttccagcc tgcacacact
     4621 agagggcagg cagcccccgg caggacttct gacctccccc acttctcaag cggctagcct
     4681 cattacacat tactgtcatt tccactcggc tcttgagatt cctagtttaa ctcgccttga
     4741 tgtctggcct tataaactgc acagtggttt gtactgtcaa ataaaaacac cgtgtatact
     4801 tcgcatgtgt tgtgcattcc tggtcttcaa cctcactgac acagtggctt cacctcacag
     4861 taggcccagg ccctacactt tcagctgcct gtcttgggtc tttcaaagca agccagcaac
     4921 acacaggaca tgtttactaa acccactacc caagagaggg gagtaggggg agaaccgggc
     4981 agcatgcatg tcttttagtc agccagggag ctgaccaatc aatctttgcg tttagtgtcc
     5041 tatcctgtgg cttttagctt tctgttactt tcattatttg ttgaaatgcc ttgccccgag
     5101 ataccatcaa agccaccaca catagcaaag ccaccacacg cttcattagc caaaccagaa
     5161 ggagcctaaa ttgaaatctc tcagacaccc tacacccatc tttctcattc gctttgaaca
     5221 gcaggcctcc ccaaaatgct ggctgacgta cggtcacgac tttgtaattc ctgtccactg
     5281 taaaactgtt tttactcttt atacatactt ttcagactgc ctttcttttt gtaatttctg
     5341 gaaggtttgt aaatgaatga cgaagctttt ccccattgtg tcttcaaaaa ctatattgta
     5401 aattgtaata taattgtatg tggtagattg gattaaaagg ccgttcctcg gtgtgtgaag
     5461 tgctgtgcgg atgtgtgcat gtgtacagtt agggtgacat attttctaga aataaacttt
     5521 gttattttgt acaatgcca
//
