LOCUS       XM_039101402            6826 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RIC1 homolog, RAB6A GEF complex
            partner 1 (Ric1), transcript variant X4, mRNA.
ACCESSION   XM_039101402
VERSION     XM_039101402.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6826
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6826
                     /gene="Ric1"
                     /note="RIC1 homolog, RAB6A GEF complex partner 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 19 ESTs, 4 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     25 samples with support for all annotated introns"
                     /db_xref="GeneID:309306"
                     /db_xref="RGD:1310016"
     CDS             37..4281
                     /gene="Ric1"
                     /codon_start=1
                     /product="guanine nucleotide exchange factor subunit RIC1
                     isoform X4"
                     /protein_id="XP_038957330.1"
                     /db_xref="GeneID:309306"
                     /db_xref="RGD:1310016"
                     /translation="MYFLSGWPKRLLCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSI
                     WYSRPSVLIVTYKEPAKSSAQFGSYTQAEWRPNSTMIAVSTANGYILFFHITSSRGDK
                     YLYEPVYPKGSPQMKGIPHFKEEHCAPALNLEMKKILDLQAPIMSLQSVLEDLLVATS
                     DGLLHLIHWEGMTNGRKAINLSTVPFSVDLQSSRVGSFLGFADVHIKDMEYCATLDGF
                     AVVFNDGKVGFITPVSSRFTAEQLHGVWPQDVVDGTCVAVNNKYRLMAFGCASGSVQV
                     YTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSAVIVTWEYGGLSLWS
                     VFGAQLICTLGGDFAYRSDGTKKDPLKINSMSWGAEGYHLWVISEFGSQHTQTDTDLG
                     SAVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQTQNLKYSSARA
                     EHMPRHEKSPFADGGLESPGLSTLLGHRHWHVVQFSAIDKLGQNIAVAGKFGFAHYSL
                     LTKKWKLFGNITQEQNMIVTGGLAWWNDFMVLACYNLSDRQEELRIYLRTSNLDNAFA
                     HVTKAPIETLLLSVFRDMVVVFRADCSICLYSIERKSDGSSTTASVQVLQEVSMSRYI
                     PHPFLVVSVTLTSVSTENGITLKMPQQARDAESIMLNLAGQLIMMQRDRSGPQIREKD
                     SNPSQRKLVSNALPFCPPVVLAQSVENVWTTCRANKQKRHLLEALWLSCGGAGMKVWL
                     PLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRNSAR
                     EQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGEQALLLAQSCAALAYFPHVLELMLH
                     EVLEEEASSREPIPDPLLPTVAKFISEFPLFLQTVVHCARKTEYALWNYLFAAVGNPK
                     DLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKWDLCRHMIRFL
                     KAIGSGESETPPSTPTSQEPSSSGGFEFFRNRSISLSQSAENVPPGKFGLQKTLSMPT
                     GPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCFAAQLGFELISWLCKER
                     TRAARVDNFVVALKRLHKDFLWPLPIIPASSISSPFKNGKCRAVGEQLLKSQSADPFL
                     TPEMDAGISTIQRSQSWLSSIGPTHRDADIASSPGPQMQDAFLSPLSNRGDECSIGSA
                     TDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFM
                     EAGCLDWCVVIGLILKESSVVSQILGIAQSSEIDGEMLQNIKAGLHAVDRWASTDCPG
                     YKPFLNIIKPQLQKLSEITEELVQPDTFQPITVGKSPEQTSPRAEESRGSSSHGSITQ
                     SETGSNNSMVSRKEEDTTQADEEEPFQDGAYDCSVS"
ORIGIN      
        1 ggggccgccg gggactgtcg gggccgcgcg cggaccatgt atttcctgag cggctggccc
       61 aagaggctgc tctgcgcgcc gcggagcccg gccgaggcgc cgctccacgt ccagtctgac
      121 cctcggagag cgttcttcgc cgtgctggcc ccggcccgcc tcagcatctg gtacagccga
      181 cccagtgtgt taattgtaac atacaaggaa ccagctaaat cgtctgctca gtttggatct
      241 tacacacaag ctgaatggag gccgaacagt accatgatag cagtgtcaac agcaaatggc
      301 tacatcttgt tttttcatat tacatcttca agaggggata aataccttta tgaaccagtg
      361 tatcccaaag gaagtccaca aatgaagggg atacctcatt ttaaggaaga acattgcgcc
      421 ccagcattga atttagaaat gaagaaaata ctggatttgc aagcacccat catgagtttg
      481 cagtctgtgc tggaagatct ccttgttgca acttctgatg gacttcttca tcttattcat
      541 tgggaaggaa tgacaaatgg aagaaaagcc atcaatctct ctacagtacc cttttcagta
      601 gaccttcagt catctagagt aggttcattc ctcggctttg cagatgtgca cattaaagat
      661 atggaatatt gtgccacact tgatggattt gctgttgtgt ttaatgatgg taaagttgga
      721 tttattacac cagtatcgag tagatttact gcagagcagc ttcatggagt ttggccacaa
      781 gatgttgttg atgggacttg tgttgcagta aataacaaat accgactgat ggcctttggt
      841 tgtgcaagtg gttctgtgca agtctatacg atagacaaca ctactggagc catgctgctg
      901 tctcataaac tagagcttac agcaaagcag tatcctgaca tctggaacaa aacaggagct
      961 gttaaattga ttagatggtc tcctgacaac agtgctgtaa tagtaacctg ggaatatgga
     1021 ggtctttctc tgtggagtgt gtttggagcc cagctgattt gtacacttgg aggagacttt
     1081 gcttacaggt cagatggtac caaaaaagat ccccttaaga tcaactccat gagctggggt
     1141 gcagaaggct atcacctatg ggtaatcagt gaatttggtt ctcagcacac tcaaactgac
     1201 actgacctcg ggagtgcagt taaagagccc agcattttgt tatttcagtt tatcaagagt
     1261 gtactcactg taaacccttg tatgagtaac caagaacagg tgttacttca gggagaagat
     1321 cgcttatact tgaactgtgg agaagcctca cagacccaaa atctgaagta ctcttcagca
     1381 cgtgctgagc atatgcccag acacgagaag agcccatttg cagatggagg tctagagtct
     1441 ccaggattaa gcactttact tggacatcga cattggcatg ttgtacagtt ttcagctatt
     1501 gataaacttg gacaaaatat cgctgtggct ggcaagtttg ggtttgcgca ttattcttta
     1561 cttaccaaga aatggaaact ttttggaaac attactcagg agcaaaatat gattgtgact
     1621 ggtggcttag cctggtggaa tgactttatg gtccttgcct gttacaactt aagtgaccgc
     1681 caagaagagc tcagaatcta cctacgaaca tcaaacctgg acaatgcctt tgctcatgtc
     1741 accaaagcac caatagaaac attactgctt agtgtcttcc gggacatggt ggtagtgttt
     1801 agagcagact gttcaatatg cctctacagt attgaaagaa aatccgatgg ttcgagtacg
     1861 acagcgagtg ttcaggttct tcaggaggtc tccatgtcga ggtacattcc tcatcccttc
     1921 ctggtggtgt ctgtcacact gacgtcagtg agtacagaga atggcatcac cttgaaaatg
     1981 ccacaacagg ctcgggatgc agagagcata atgctgaacc ttgcaggaca gctcatcatg
     2041 atgcagaggg accggtcagg ccctcagatc cgggagaagg acagtaaccc tagccaaagg
     2101 aaactcgtga gtaacgctct gccgttctgc cctcccgttg tactagctca gtcagtggaa
     2161 aatgtctgga ctacctgtcg agcaaacaaa caaaagcgtc accttctgga ggccctctgg
     2221 ctgagctgtg gtggtgcggg gatgaaggtt tggctccctc tcttccccag ggatcaccga
     2281 aagccccact ccttcttgtc ccagcggatc atgctgcctt tccacatcaa catttacccc
     2341 ctcgccgttc tgtttgaaga cgcgttggtc cttggtgctg tcaatgacac tctgctctat
     2401 gattctctgt acacacggaa cagtgctagg gagcagctgg aggtgctctt tcccttctgc
     2461 gttgtggaga gaacctctca gatctacctc caccatatcc tccgccagct cctggtcagg
     2521 aaccttggcg agcaagccct ccttctggct cagtcgtgcg ctgcgttagc ttacttccct
     2581 catgtgttgg agctcatgct ccatgaagtg ctggaagagg aagctagctc acgggagccc
     2641 attcccgacc cgctgcttcc taccgtggcg aagtttatct ccgagttccc cctcttcctt
     2701 cagacagtcg tgcactgcgc ccggaagact gagtatgcgc tgtggaatta cctttttgca
     2761 gctgttggga accccaagga cttattcgag gaatgtttga tggctcagga cttggacaca
     2821 gctgcctctt accttattat cctacagaat atggaagtcc ccgcagtaag taggcagcat
     2881 gccacccttc tgttcaacac agcactggaa cagggcaaat gggacctgtg tcgacacatg
     2941 attagatttc ttaaagccat tggttctgga gaatctgaga cccctccatc cacaccgaca
     3001 tctcaggagc ccagttcaag tggtggcttt gagttcttca ggaatcgcag catcagttta
     3061 tcccagtcag ctgaaaatgt tcctcctggt aaattcggct tacagaaaac tctaagtatg
     3121 ccaactggtc cttctgggaa aaggtggagc aaagacagtg actgtgcaga gaacatgtac
     3181 atcgacatga tgctgtggcg acacgctcgg cgtctcctag aagacgtgcg cctgaaggac
     3241 ctgggctgct ttgcagccca gctaggcttt gaactcatca gttggctttg caaagaacgc
     3301 actcgagccg cccgtgtgga caactttgta gtagccctga agagactgca caaggatttc
     3361 ctgtggcctc ttcccattat cccagcctct tccattagtt cccctttcaa aaatgggaaa
     3421 tgtcgagcag tgggagagca gctgttgaag tctcagtcag ctgacccttt tcttacccct
     3481 gagatggatg ccggcatctc taccatccaa cgcagtcaga gctggctcag cagcattggt
     3541 cccacccatc gtgacgcaga catagcctca tctcctggac cacaaatgca agatgctttc
     3601 ctctcaccat tatctaatag aggggatgaa tgcagcattg gctcagctac agacttgact
     3661 gaaagcagct ccatggtgga tggagactgg acaatggtgg acgaaaactt ctccacactc
     3721 agcttgactc agtctgagct ggagcacatc tccatggagt tggcaagcaa agggccccac
     3781 aaatctcaag ttcagctgcg ttatctgctg cacattttca tggaggcagg atgtctggac
     3841 tggtgtgttg tcatcggcct gattctcaaa gaatcctccg tggtcagtca gattcttggg
     3901 attgctcagt cttcagagat agatggagag atgttacaga acataaaagc agggctgcac
     3961 gccgtagacc gatgggcctc tacagactgc cctggatata agccattttt aaacatcatt
     4021 aagccacaac tacagaagct cagtgagata acggaagagt tggtccagcc tgacaccttc
     4081 cagccaataa cagtgggtaa gagtcctgaa cagaccagcc cccgggcaga ggagagcagg
     4141 ggctcttcta gccatgggag catcactcag agtgagaccg ggagtaacaa cagcatggtc
     4201 agccggaaag aagaggacac aacacaagca gatgaagagg agccatttca ggatggggct
     4261 tatgactgtt ctgtgtcctg acaacgagca ggcagtatta gtcacagcag cgtgcaccag
     4321 agcaccttgt gacctgctga gtgacgtaac aggtaaaaga gcttggggcg gaactctttc
     4381 ataaagtgtt ataatttaat gaattcttcc tctaaatctc ttcgactcca tttaaaaaaa
     4441 gaagtgtggt atcaaagcct ctttttaagc tgcagtagaa agtaatgagc agtatataga
     4501 tgcacatgca catatgatat ttgattttct tcacagtttg tagttgtagg aattattcat
     4561 aacggatcgt tagtgtaggg attactctgc cccaagtgag cttatttttt cactcctatg
     4621 gcttatgtac tttctggttc agcatgtctg actggtttgt cctgtgggtg ggttaccttt
     4681 ctttaaatga gtgctaaggc gcttgctgca gctcgtcagc tgcctgagca actgtctgct
     4741 tccgtgtggt gtggagtcag ccggaccctt acttggtcct tcgaatcctg cgcttgtaag
     4801 gaaggctcag tggacagaca ccttgtgact ttggtacgtt gttcaccagc agtcctgggt
     4861 tgatggaagc cagttacctg tgacttaatg tgcctgtttt agcaagctta attccttcta
     4921 gatcagtgtg ggcagagggg gaggggttct tatcaattat gctgacacca ctaaattttg
     4981 tatcaaagaa ctgtatcttt ttgtgaatat tcatgtaaat atactcaaag gcactgtcca
     5041 tatttttaag gtgtgtatta taatctgtaa ggtttacgct ggattctgca tgactatact
     5101 cactcttgga ataaagacaa gactttcttc tttccaaaat gagcagtcat catagaggaa
     5161 gacaggtttg ttggcccagc tgtaaagtag tagtcatccc actgatcatg aggggaacag
     5221 gttttgtgca aattaatgga gtttcttatt tattgctttt gtaaattgaa taaaaatggg
     5281 cttttatgta aatagactgt gggatcctgt attatcagct actaaaaatt actttgtaaa
     5341 ttctttatta taaagtttaa aaatatttta tgtatttcta gatgtgactt aaattttagt
     5401 tttcatacat tatgaaagca gaactacata ttcagttgct tcagactaaa cacataccta
     5461 ccacatgtaa ttctaattat taataacagt attaatttag atagcttatt tgtactgtgc
     5521 aatttgaaca aggaatgcaa tgttattttt tataaaatct tgtttatttt tataacaaca
     5581 atgtatttga agtggaccaa attcgtacca ccgtgtaaaa cagcctctct tataatgcag
     5641 atgttgctta gaaatggaat tcagccctct gttcctgcct tctaaactaa agagatagac
     5701 tgcatcctct taggcagtac ctttagagga aacctcagaa ttattttgaa attatttcaa
     5761 atttcaccac ctagtaaaaa ttattgaatt tagtaattac tgttatttcc tttctacatt
     5821 agaagtgcaa taattttata taataaaatc cctgaatggg tgaaatatgt tgctattggt
     5881 acctggtcct tctggtgcta cttttattta agtcattgta tcaaatcacc accttgttct
     5941 gaattttaaa atagagaata aagtttccta tgtaagtaga tgccgtgcag caaaaaaaac
     6001 aaaaactaag ctgaaatatc ttctgtccca ttccattagg gacaagagcc agcaattctt
     6061 ctgtatctag tcaatttcta atgtgactac tcagttatta aagcagtgtt accatcataa
     6121 gcagcagtgg tgtttccaga tgtcttacat gggtgctgct gagttcatct aactttggtg
     6181 gtgagggcag tataaggacg agcatacggc ctctcatgct aaccaagtgt tccactactg
     6241 agttatatcc cacaagcccc tgcctttttt tttttttttt tttttttttt tttttttttt
     6301 ttgaggcaga gccttgccca agctggacac caatttgtaa ctcttcctta gctgccccca
     6361 taactggttt ttacagccgt gtgctgccat acccagtcat aggactatca cctcacaatc
     6421 ttaaaagcag agtctggatt agctaatgtg actcctgtgg tttgagctgg gaatgactca
     6481 gataaaatac atagtgtgta ctgagtagaa ctaggaaaca ccaaagcaag aaatttggca
     6541 agcttaataa aaattattct ttggttgttg tatacttttt aaaaaattgt gttttgctgc
     6601 attgtttggt ttaaaacata tcacctgtaa agccatatct ttaatgaact taaatattca
     6661 gcataactat ttgaaagcta atatatatgg ttaaattttt tgctgatacc aaaacatatc
     6721 atttggagat acaaacaact tttgcttgta attaaagttg ctgctgcttc tgtaatgtgt
     6781 attcccaccc gttggtaaag ggtaataaaa ctattacaca aacaaa
//
