LOCUS       NM_001013949            1340 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus RIB43A domain with coiled-coils 2 (Ribc2), mRNA.
ACCESSION   NM_001013949 XM_217007
VERSION     NM_001013949.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1340)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 1340)
  AUTHORS   Bailey,M.J., Coon,S.L., Carter,D.A., Humphries,A., Kim,J.S.,
            Shi,Q., Gaildrat,P., Morin,F., Ganguly,S., Hogenesch,J.B.,
            Weller,J.L., Rath,M.F., Moller,M., Baler,R., Sugden,D.,
            Rangel,Z.G., Munson,P.J. and Klein,D.C.
  TITLE     Night/day changes in pineal expression of >600 genes: central role
            of adrenergic/cAMP signaling
  JOURNAL   J Biol Chem 284 (12), 7606-7622 (2009)
   PUBMED   19103603
  REMARK    GeneRIF: Expression of Ribc2 exhibits a 24-hour rhythm in the rat
            pineal gland, with >25-fold higher values occurring at night.
            These changes appear to reflect neural stimulation and
            norepinephrine-cyclic AMP signaling.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC079434.1.
            
            On Apr 20, 2005 this sequence version replaced XM_217007.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079434.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1340              BC079434.1         1-1340
FEATURES             Location/Qualifiers
     source          1..1340
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1340
                     /gene="Ribc2"
                     /gene_synonym="RGD1309033"
                     /note="RIB43A domain with coiled-coils 2"
                     /db_xref="GeneID:300122"
                     /db_xref="RGD:1309033"
     exon            1..286
                     /gene="Ribc2"
                     /gene_synonym="RGD1309033"
                     /inference="alignment:Splign:2.1.0"
     CDS             173..1306
                     /gene="Ribc2"
                     /gene_synonym="RGD1309033"
                     /codon_start=1
                     /product="RIB43A-like with coiled-coils protein 2"
                     /protein_id="NP_001013971.2"
                     /db_xref="GeneID:300122"
                     /db_xref="RGD:1309033"
                     /translation="MEVAIPKDLQQEASLAKKRYMDLCRQGQIFDARNRIIGGDTQAW
                     DVQVRNQKIKEVTEKARDETFAAEMRHNDKVMCIMHDRELRHRKQLCRAINDFQQRFQ
                     KPETRREFDLSDPLALKKELPARVSDNDMRNTISGMQKFMGEDLNFQERKRIQKEQNR
                     EWSLQQHGEWERAQAEHKLAEHLHTQTELKFDEAARDLQRLEITTRKAVCAAVKEFNK
                     KQVVELAERKRQVKQQEQEDNMSEITNLLHGDLLSENPQQAASNFGPRHVMLDRWKGM
                     NREQLEEIWSTWKQQIHEKLRLQEEERQHNMDWDLRRTRKAHASLLQERQQQRLLREQ
                     RRALDCSNLSLAKQQYLQKRQLDAAPSSQPTEDYFSQFNTRSR"
     exon            287..368
                     /gene="Ribc2"
                     /gene_synonym="RGD1309033"
                     /inference="alignment:Splign:2.1.0"
     exon            369..713
                     /gene="Ribc2"
                     /gene_synonym="RGD1309033"
                     /inference="alignment:Splign:2.1.0"
     exon            714..832
                     /gene="Ribc2"
                     /gene_synonym="RGD1309033"
                     /inference="alignment:Splign:2.1.0"
     exon            833..1060
                     /gene="Ribc2"
                     /gene_synonym="RGD1309033"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..1227
                     /gene="Ribc2"
                     /gene_synonym="RGD1309033"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1308
                     /gene="Ribc2"
                     /gene_synonym="RGD1309033"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gattcctgcg ccacaaagat cgttgcggaa agcggactgc ctgtgtccgc tgggacagac
       61 ttgctctcaa acttttgtgg gcgctgcttc tcggcgctgt agcttatttc tgtgggcttt
      121 tcttaccgtg tttgttcaga aagcccctga agccttgcca aactccagag ccatggaggt
      181 agcaattcct aaagacctac aacaggaggc cagcctagcc aagaagcggt acatggacct
      241 gtgcaggcag ggacagatct tcgacgccag aaacaggatc attgggggag acacacaagc
      301 ctgggatgtt caagttcgta accagaagat aaaagaagta actgaaaaag ctagggatga
      361 aacctttgct gccgaaatga ggcacaatga caaagtcatg tgcataatgc atgaccggga
      421 actgaggcac aggaagcagc tatgtagagc tatcaatgac ttccagcagc gttttcagaa
      481 gccagaaact cgccgtgaat ttgatctttc tgaccccctg gcccttaaga aagagcttcc
      541 agcccgggtt tcagacaatg acatgcggaa caccatatca ggcatgcaga agttcatggg
      601 ggaggattta aacttccaag agaggaagag aatccagaag gaacagaacc gagaatggtc
      661 tctgcagcag cacggggaat gggagcgagc ccaggctgaa cacaaactgg cagaacacct
      721 ccacacacag acggaactaa agtttgatga agcagccaga gacttgcaga ggctggaaat
      781 caccaccagg aaggcagtct gcgcagcagt gaaagagttc aacaagaaac aggttgtgga
      841 gttggcagaa aggaagaggc aagtgaaaca acaagaacaa gaggataaca tgagcgagat
      901 caccaacctg ctgcatgggg acctactctc tgagaaccct cagcaggcag ccagcaactt
      961 tggacctcgc catgtgatgc ttgaccgctg gaagggcatg aaccgggagc agttggagga
     1021 gatctggtca acatggaagc agcaaatcca tgagaaactg aggcttcagg aggaagagcg
     1081 ccagcacaac atggactggg acctgcgcag gacccggaag gctcatgcca gcctgctgca
     1141 ggagcgacaa cagcagcgtt tgttgcggga acagcgcagg gccttggact gcagcaacct
     1201 cagcctggcc aagcagcagt atttacagaa aagacaattg gatgcagccc cctcaagtca
     1261 acccacagaa gactatttct cacagtttaa tacaagaagc cgctaatgaa aaaaaaaaaa
     1321 aaaaaaaaaa aaaaaaaaaa
//
