LOCUS       NM_001007715            1514 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RIB43A domain with coiled-coils 1 (Ribc1), mRNA.
ACCESSION   NM_001007715 XM_228840
VERSION     NM_001007715.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078998.1.
            
            [WARNING] On Oct 24, 2024 this sequence was replaced by
            NM_001007715.2.
            
            On Nov 29, 2004 this sequence version replaced XM_228840.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078998.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq13"
     gene            1..1514
                     /gene="Ribc1"
                     /note="RIB43A domain with coiled-coils 1"
                     /db_xref="GeneID:317431"
                     /db_xref="RGD:1359621"
     exon            1..82
                     /gene="Ribc1"
                     /inference="alignment:Splign:2.1.0"
     exon            83..169
                     /gene="Ribc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             170..1306
                     /gene="Ribc1"
                     /codon_start=1
                     /product="RIB43A-like with coiled-coils protein 1"
                     /protein_id="NP_001007716.1"
                     /db_xref="GeneID:317431"
                     /db_xref="RGD:1359621"
                     /translation="MYKLDLAPDPKELAAIEARRNREKERQCRFFNVRNRVMGVDVEA
                     LNYQVEERKFREAIERSKDMAYGAKHAHYDLVAQMLEKEEAERACRLSKRVQDFREQR
                     QQFKNGHEFDFWDPDHVQEFQVPYYENEAYFGPASMQYFLGEDLERASHLRMQQEQLR
                     YNLEKQLQEQQAAREEEARAALLSDQLRLAADTRAAELARLEESCRAAMRTAMANANK
                     AQAAKQALLQRREQQQQQEANLAEIKKQVTSDLLTENPQVAQRPSAPHRVLPYCWKGM
                     TAEQRAAIRKTQENQRQEKKEQRQAEKLVEAEWGSQSKRLAEAALELEEQERELCAEF
                     RRGLGSFNRELAKEQHAQQNYLNSVIYTNQPTSHYYLQFNTSSR"
     exon            170..286
                     /gene="Ribc1"
                     /inference="alignment:Splign:2.1.0"
     exon            287..368
                     /gene="Ribc1"
                     /inference="alignment:Splign:2.1.0"
     exon            369..710
                     /gene="Ribc1"
                     /inference="alignment:Splign:2.1.0"
     exon            711..829
                     /gene="Ribc1"
                     /inference="alignment:Splign:2.1.0"
     exon            830..1224
                     /gene="Ribc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..1488
                     /gene="Ribc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggggcctga gcccacgctt gctaagaaag aagtcagtac aaggttctgc cagagcgagt
       61 gggaggcaga cgttcggctg tgaatttaaa gactgctgtt gtacatcaag agccaacttg
      121 ggcccagtcc acttaagagc ttcaaaattg gaattctgta ctgagaaaga tgtataagtt
      181 agaccttgca ccagatccca aggagctagc agccattgag gctagaagaa atcgtgaaaa
      241 ggaacgacaa tgccgattct tcaatgtgcg gaaccgagtc atgggggtgg atgtggaagc
      301 cctcaactac caggtggagg aacgaaagtt tcgggaggca atagagcgaa gcaaagatat
      361 ggcttatggt gccaagcatg cacactatga tctggtagca cagatgctag agaaagaaga
      421 ggcagaacga gcatgtcggc tgtccaagag agtgcaggat tttcgggagc aaaggcagca
      481 attcaagaat ggacacgaat tcgacttctg ggatccagac catgtccagg agtttcaggt
      541 cccttattat gagaacgagg catactttgg cccagcaagc atgcagtact tccttggaga
      601 ggacctggag agggcctcac acctgagaat gcagcaggaa cagttgagat acaacctgga
      661 gaaacagctg caggagcaac aggcagccag agaagaggaa gcacgagcag ctttgctcag
      721 tgaccaactg cgtctagccg cggacactcg ggctgctgaa ctggctaggc tggaggaatc
      781 ctgccgcgca gctatgagga ctgctatggc caatgccaac aaagcccagg cagctaagca
      841 agccctgctg cagcgccgtg aacagcagca gcaacaggag gcgaacctcg cagagatcaa
      901 gaaacaagtc accagtgacc tgctgaccga gaatcctcaa gttgctcaac gccccagtgc
      961 tcctcaccgg gtcctgccct attgttggaa gggcatgact gcagagcaga gagctgccat
     1021 caggaaaacc caagaaaacc aacgacaaga gaaaaaggaa cagcgccaag ccgaaaagct
     1081 cgtggaagcc gagtggggaa gccaaagcaa acggttggct gaagcagcac tggagctgga
     1141 agaacaggag agggaattgt gtgcagaatt tcgaagagga ctgggctcct tcaaccggga
     1201 gttagctaag gaacagcatg ctcagcaaaa ctatctgaat tcagtcatct acaccaatca
     1261 accaacttca cactattacc tacagttcaa caccagcagc cgctgaactc aggatggtca
     1321 cctcccatct cacctatcaa tctcacaggt ggccaggagt caaaaaatgc tacatacccc
     1381 catttctaat ctcagtaaga gggaactaat tcccccattt ctaatctcag taggagggaa
     1441 ctaagcccaa acctctttaa taacaataaa gttgttcacc acaatgaaaa aaaaaaaaaa
     1501 aaaaaaaaaa aaaa
//
