LOCUS       NM_001107505            3484 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus rhophilin, Rho GTPase binding protein 2 (Rhpn2),
            mRNA.
ACCESSION   NM_001107505 XM_001079717 XM_238787
VERSION     NM_001107505.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3484)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Mar 16, 2021 this sequence version replaced NM_001107505.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.1539.1,
                                           SRR26643299.2135.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                JAXUCZ010000001.1  97128054-97128151
            99-214              JAXUCZ010000001.1  97148465-97148580
            215-343             JAXUCZ010000001.1  97155701-97155829
            344-419             JAXUCZ010000001.1  97158396-97158471
            420-497             JAXUCZ010000001.1  97165969-97166046
            498-622             JAXUCZ010000001.1  97166349-97166473
            623-789             JAXUCZ010000001.1  97167552-97167718
            790-977             JAXUCZ010000001.1  97171756-97171943
            978-1134            JAXUCZ010000001.1  97172384-97172540
            1135-1254           JAXUCZ010000001.1  97175187-97175306
            1255-1449           JAXUCZ010000001.1  97177187-97177381
            1450-1526           JAXUCZ010000001.1  97179605-97179681
            1527-1673           JAXUCZ010000001.1  97180750-97180896
            1674-1829           JAXUCZ010000001.1  97181338-97181493
            1830-3484           JAXUCZ010000001.1  97187149-97188803
FEATURES             Location/Qualifiers
     source          1..3484
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3484
                     /gene="Rhpn2"
                     /note="rhophilin, Rho GTPase binding protein 2"
                     /db_xref="GeneID:308516"
                     /db_xref="RGD:1308366"
     exon            1..98
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..2090
                     /gene="Rhpn2"
                     /codon_start=1
                     /product="rhophilin-2"
                     /protein_id="NP_001100975.1"
                     /db_xref="GeneID:308516"
                     /db_xref="RGD:1308366"
                     /translation="MTDALLPAAPQPLEKESDDYFRKGCNPLAQTGRSKLQNQRAALN
                     QQILKAVRMRTGAENLLKVTTNQKVREQVRLELSFVNSDLQMLKEELEGLNISVGVYQ
                     GTEEAFTIPLIPLGLKETKEVDFSIVFKDFILEHYSEDSYLYEDDIADLMDLRQACRT
                     PSRDEAGVELLMSYFIQLGFVESRFFPPTRHMGLLFTWYDSFTGVPVSQQTLLLEKAS
                     ILFNIGALYTQIGTRCNRQTEAGLESAVDAFQRAAGVLNYLKETFTHTPSYDMSPAML
                     SVLVKMMLAQAQESVFEKICLLGIQNEFFVLVKVAQEAAKVAAAYRQLHAAMSQEPVK
                     ENIPYSWASVAYVKAYHYGALAHYFAATLLIDHQLKPGADEDHQEKCLSQLYDRMPEG
                     MTPLATLKNDGQRVLLGKGHLHRAIDYHKESLREANLCKKLRDIQVLRDVLSAAHQRT
                     QLKYTQHQQDDDLLNLIDAPDVLPKTEREVKITFPDFSKVTVTDFFQKLGPLSVFSAS
                     KRWSPPRGIHFRVEEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGLDC
                     KWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKCATYSVGMQKTYSMICLSMDD
                     DDKADKTKKISKKPSFLSWSTSKNRQKSASTLCLPNVGLARPQNKKKLPTPFSLLNSD
                     SSLY"
     exon            99..214
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            215..343
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            344..419
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            420..497
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            498..622
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            623..789
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            790..977
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1134
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1135..1254
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..1449
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1450..1526
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..1673
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1674..1829
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1830..3484
                     /gene="Rhpn2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttcaccct cgactcccgc gctgccagca tgaccgacgc gctgctacct gcggcccccc
       61 agccgctgga gaaagagagt gacgactact ttcgaaaggg ctgtaatcct ctcgcacaaa
      121 ctggccggag caagctgcag aatcaaaggg ctgccttgaa ccaacagatc ctgaaggctg
      181 tgcggatgcg gacaggagct gagaaccttc tgaaagtcac cacgaaccag aaggtgcggg
      241 aacaggttcg cctggagctg agctttgtca actcagacct gcagatgctg aaggaagagc
      301 tggaggggct caacatctcc gtgggagtgt accaaggcac cgaggaagcc ttcaccattc
      361 ctctgattcc tctcggcctg aaggaaacca aagaagttga cttttccatc gtcttcaagg
      421 attttatttt ggaacattac agtgaagata gctatttgta tgaggatgac attgcagacc
      481 ttatggacct gcgacaggcc tgccgaacac ccagcaggga tgaggcaggg gttgaactgc
      541 tcatgtcata cttcattcag ttgggctttg tggagagtag gtttttcccg cccacccgcc
      601 acatggggct cctgtttacc tggtatgact cgttcactgg agttccggtc agccagcaga
      661 ccctgctgtt ggagaaggcc agcattctct tcaacattgg ggcactgtac acccagattg
      721 ggacccgctg taaccggcag acagaggctg gcttggagag cgccgtggat gcctttcaga
      781 gagctgcagg ggttttaaac tacctgaaag agaccttcac tcacactcca agttacgaca
      841 tgagccctgc catgctcagc gtgctggtca aaatgatgct cgcccaagcc caagaaagcg
      901 tgtttgagaa aatctgcctc ctggggatcc agaatgagtt ctttgtgctg gtaaaggtgg
      961 ctcaggaggc tgccaaggtg gcagcggcct accggcaact gcatgcagcc atgagccagg
     1021 aaccagtgaa agagaacatc ccgtactcgt gggccagcgt ggcctatgtg aaggcctacc
     1081 actatggcgc gctggctcac tactttgcag ccacactcct catcgaccac cagctaaagc
     1141 caggcgcgga cgaggaccac caagagaaat gcctgtccca gctctatgac cgcatgccgg
     1201 aagggatgac gcctctggcc acgctgaaga atgatgggca gcgtgtactg ctcggtaaag
     1261 gacatctgca ccgggccatt gactaccaca aggagtcact gagggaggct aacctgtgca
     1321 agaagctgcg tgacattcag gtgctccgag atgtgctgtc tgctgcccat cagcgcactc
     1381 agctcaagta cacccagcac caacaggatg atgatcttct gaacttgatt gacgctccag
     1441 atgtccttcc caaaactgag cgagaggtca aaataacctt ccccgacttc tcgaaagtga
     1501 cagtgacaga cttctttcag aagctgggtc ccctgtctgt gttttcggcc agcaagagat
     1561 ggtcacctcc tcgaggcatt cacttcagag tagaggaagg ggacttgggc ttcaccttac
     1621 gagggaatac cccagtccag gtgcactttc tggaccctca ctgctctgct tcgcttgcag
     1681 gggccaagga aggagattat atcgtctcca ttcaaggctt ggactgcaag tggctgacag
     1741 tgagtgaggt tatgaagttg ctgaagagct ttgggggaga agaggtggag atgaaggtcg
     1801 tgagcctcct ggactccaca tcatccatgc ataataagtg tgccacctac tccgtgggga
     1861 tgcagaaaac gtactccatg atatgcttgt ccatggacga tgacgacaaa gctgacaaga
     1921 ccaagaagat ctcaaaaaag ccctccttct tgagttggag caccagtaaa aacagacaga
     1981 agtcggccag cacgctgtgc ctccccaatg ttggcctggc aaggccgcaa aacaagaaga
     2041 agctcccaac tcccttcagc ctgctcaatt ccgacagctc tctgtactga agggaggagc
     2101 cggacggaac aggtcactct gcgcccacca tggctctcca accacccatg ccgtgatggg
     2161 aatgttttcc aactccatct tctcagagtg taaactttgt ctgatgtgct tgttgtgaac
     2221 gtgaaagaga gctctagaaa ctggtgggag acccagccgc acggggatct tcacactgct
     2281 acggttattt attctctaaa gtagggcata gaagagcctg gatgtcttag ctggtttgtg
     2341 gttttcccag ttttctctgt gtagccctgc ccgtccgaga agttgccctg tagactaggc
     2401 tagcctcgaa ctcccagatc cacctgcctc tgccacccga gtgctgggat taaaggtgtg
     2461 tgccaccacc acccagcagc tgctacagct gtttttaatg gctatgattt tgatattcag
     2521 gcatggtgag agatgaattg ggaccaccta cttggtatta catctgagtg tttagagttg
     2581 gataatagtg atctctctta acctcaagtt caagtgactc ttgaatggag gcaggttaga
     2641 gatgttatta aaaccagact gcttggaaga tttctgtgag tttgaggcta gcctggtcta
     2701 catagtgagt tccaggacag ccgggcctac acagagactc tgtctcaaac aaacaaaacc
     2761 aaaactggct gctttaagta cttgggaatt catgagatga aaatggtgac attttctgtc
     2821 attcctgcat aatctgactg ctctttccca gttaaagtct agtgccaatt ttgcctttcc
     2881 ttactctggg accagcttcc ctcagtttat catactgacc attagctaac acagtggcag
     2941 tgttaggaga tgctgtctac agggtagata atatgctgtt tgatactcaa aacgttgctc
     3001 cctttgttta aagtaggaag tatgtaacta tgtattttaa gagtcttggt ttaggggctg
     3061 gggatttagc tcagtggtag agcgcttacc taggaagcgc aaggccctgg gttcggtccc
     3121 cagctccgaa aaaaagaacc aaaaaaaaaa aaaaagagtc ttggtttaaa tagtagtttt
     3181 gcagtttaca agttaaggac gtaaacttac tcaagttgaa acctctactt gactttgtat
     3241 ctgtcaactc gactttgggg ctaaaggttg gatgacactg tgactgcttt tcagagtcat
     3301 ggttgacaca gtttaagcga tgtgcttaat gatatagcct gtggatctta gttagagaag
     3361 taacaaggat ttaaatattt ttctattgtg caatatctca agaacacaaa cgccttaagg
     3421 aaagcgtgcc cgctgtccct ggggctgttt gtataaatat ttaaataaag tcatgttcat
     3481 tgtt
//
